Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060751.seq
         (473 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    24   0.95 
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    22   2.9  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    22   2.9  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    22   2.9  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   3.8  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    22   3.8  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   3.8  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    22   3.8  

>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 23.8 bits (49), Expect = 0.95
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 366 PKH*AECDHRDIHLXHLYTHXRVQT 292
           P H + CD + + + +L  H RV T
Sbjct: 37  PYHCSHCDRQFVQVANLRRHLRVHT 61



 Score = 20.6 bits (41), Expect = 8.9
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -3

Query: 351 ECDHRDIHLXHLYTHXRVQT 292
           EC  R     HL TH R+ T
Sbjct: 14  ECHKRFTRDHHLKTHMRLHT 33


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -3

Query: 471 WCGHGPQ*X*LGXVGMFPH 415
           WCGHG +      +G F H
Sbjct: 36  WCGHGNKSSGPNELGRFKH 54


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -3

Query: 471 WCGHGPQ*X*LGXVGMFPH 415
           WCGHG +      +G F H
Sbjct: 41  WCGHGNKSSGPNELGRFKH 59


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -3

Query: 471 WCGHGPQ*X*LGXVGMFPH 415
           WCGHG +      +G F H
Sbjct: 41  WCGHGNKSSGPNELGRFKH 59


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 349 LGSVFGCWMVIQVTLI 396
           LGS+FGC  +  +T+I
Sbjct: 131 LGSLFGCGSIWTMTMI 146


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 349 LGSVFGCWMVIQVTLI 396
           LGS+FGC  +  +T+I
Sbjct: 97  LGSLFGCGSIWTMTMI 112



 Score = 20.6 bits (41), Expect = 8.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 334 IAMITLGSVFGCWMVIQVTLIYSSLRS 414
           I M+   SV G  MV+ + L   SLR+
Sbjct: 25  IGMLGFVSVMGNGMVVYIFLSTKSLRT 51


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 103 GLKSKKKENGDGKDNLWSAI 162
           G  +  K N  GKD LWS +
Sbjct: 85  GFLAWAKHNPRGKDALWSLV 104


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 349 LGSVFGCWMVIQVTLI 396
           LGS+FGC  +  +T+I
Sbjct: 7   LGSLFGCGSIWTMTMI 22


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,380
Number of Sequences: 438
Number of extensions: 1861
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12805416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)