Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060751.seq
         (473 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g45510.1 68418.m05590 leucine-rich repeat family protein cont...    30   0.92 
At2g41990.1 68415.m05194 expressed protein                             27   4.9  
At2g32460.1 68415.m03965 myb family transcription factor (MYB101...    27   6.5  
At1g67160.1 68414.m07640 F-box family protein similar to F-box p...    27   6.5  
At1g02190.2 68414.m00150 CER1 protein, putative similar to CER1 ...    27   6.5  
At1g02190.1 68414.m00149 CER1 protein, putative similar to CER1 ...    27   6.5  
At2g40990.1 68415.m05063 zinc finger (DHHC type) family protein ...    27   8.6  
At1g20640.2 68414.m02584 RWP-RK domain-containing protein simila...    27   8.6  
At1g20640.1 68414.m02583 RWP-RK domain-containing protein simila...    27   8.6  

>At5g45510.1 68418.m05590 leucine-rich repeat family protein
           contains leucine rich repeat (LRR) domains, Pfam:PF00560
          Length = 1222

 Score = 29.9 bits (64), Expect = 0.92
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +1

Query: 91  GQANGLKS-KKKENGDGKDNLWSAILEEVQXQGNTK 195
           G+AN  +S +KKE+ DG+D + SA  EE + Q   K
Sbjct: 279 GEANDSQSGEKKEDTDGEDEIRSADKEEPESQARVK 314


>At2g41990.1 68415.m05194 expressed protein 
          Length = 297

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +2

Query: 428 PTHPSYXHCGP*PH 469
           PTHP Y HC P  H
Sbjct: 53  PTHPHYYHCSPIHH 66


>At2g32460.1 68415.m03965 myb family transcription factor (MYB101)
           identical to putative transcription factor MYB101
           GI:18087348 from [Arabidopsis thaliana]
          Length = 490

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = +3

Query: 267 QGVGDPKKGSALXYAYIDVRDEYRDDHTRLSVWVLDGDPGHTNLLKFALSEGT 425
           Q  G P     + +  ID+ DE+  D T       D D  H N++++  S  T
Sbjct: 122 QRAGLPLYPHEIQHQGIDIDDEFEFDLTSFQFQNQDLDHNHQNMIQYTNSSNT 174


>At1g67160.1 68414.m07640 F-box family protein similar to F-box
           protein family, AtFBX7 (GI:20197899) [Arabidopsis
           thaliana]
          Length = 450

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -3

Query: 345 DHR-DIHLXHLYTHXRVQTPSL 283
           DHR D HL +L+T  R+  PSL
Sbjct: 113 DHRADFHLLNLFTRERILLPSL 134


>At1g02190.2 68414.m00150 CER1 protein, putative similar to CER1
           GI:1199467 and maize gl1 homolog (glossy1 locus)
           GI:1209703 from [Arabidopsis thaliana]
          Length = 623

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -3

Query: 333 IHLXHLYTHXRVQTPSLGLQHLASLP 256
           IHL HL TH  +    LG   L+S P
Sbjct: 295 IHLTHLTTHNSIYQMRLGFPSLSSCP 320


>At1g02190.1 68414.m00149 CER1 protein, putative similar to CER1
           GI:1199467 and maize gl1 homolog (glossy1 locus)
           GI:1209703 from [Arabidopsis thaliana]
          Length = 627

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -3

Query: 333 IHLXHLYTHXRVQTPSLGLQHLASLP 256
           IHL HL TH  +    LG   L+S P
Sbjct: 295 IHLTHLTTHNSIYQMRLGFPSLSSCP 320


>At2g40990.1 68415.m05063 zinc finger (DHHC type) family protein
           contains Pfam profile PF01529: DHHC zinc finger domain
          Length = 386

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 17/60 (28%), Positives = 26/60 (43%)
 Frame = +1

Query: 109 KSKKKENGDGKDNLWSAILEEVQXQGNTKLPSNKXVLVLGDNXTGKTSLWQTCKVLETQR 288
           ++K+    +G D +  +        GNTK+P  K +LV G   T K     TC +    R
Sbjct: 90  RNKEAPEAEGLDMITQSSEWVNNKLGNTKIPRTKDILVNG--YTVKVKFCDTCLLYRPPR 147


>At1g20640.2 68414.m02584 RWP-RK domain-containing protein similar
           to nodule inception protein GI:6448579 from (Lotus
           japonicus); contains Pfam profile: PF02042 RWP-RK domain
          Length = 844

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 151 WSAILEEVQXQGNTKLPSN 207
           W+A LEE+Q   NT  P N
Sbjct: 486 WNASLEEIQRSNNTSNPQN 504


>At1g20640.1 68414.m02583 RWP-RK domain-containing protein similar
           to nodule inception protein GI:6448579 from (Lotus
           japonicus); contains Pfam profile: PF02042 RWP-RK domain
          Length = 844

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 151 WSAILEEVQXQGNTKLPSN 207
           W+A LEE+Q   NT  P N
Sbjct: 486 WNASLEEIQRSNNTSNPQN 504


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,095,141
Number of Sequences: 28952
Number of extensions: 155497
Number of successful extensions: 453
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 811731120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)