Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060750.seq
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   104   1e-23

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =  104 bits (249), Expect = 1e-23
 Identities = 56/124 (45%), Positives = 69/124 (55%)
 Frame = +1

Query: 256 ILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIISQERGKKET 435
           +L +DRNLNTSF+ P GGGDP+LYQHLF FFGHPEVYILI+P FG++SHII      K  
Sbjct: 215 MLFSDRNLNTSFYAPEGGGDPVLYQHLFWFFGHPEVYILIMPAFGVVSHII-PSLAHKPI 273

Query: 436 FXXXXXXXXXXXXXXXXFIV*AHHNSL*V*ILXHEHIXXXXXXXXAVPTGIKIFR*LATI 615
           F                 +V +HH       +             A+PTGIKIF  LAT+
Sbjct: 274 FGKEGMLWAMLSIALLGLMVWSHHLFTVGLDVDTRAYFSAATMVIAIPTGIKIFSWLATL 333

Query: 616 HGNS 627
            G +
Sbjct: 334 TGGA 337



 Score = 52.8 bits (121), Expect = 4e-08
 Identities = 31/80 (38%), Positives = 38/80 (47%)
 Frame = +2

Query: 14  TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 193
           TVYPPLSS  +H G ++DLAI SL L GISS                   S  Q+PLF  
Sbjct: 134 TVYPPLSSITSHSGPAIDLAILSLQLTGISSTLGSVNLIATMINMRAPGLSLYQMPLFAW 193

Query: 194 AVGITAFXXXXXXXXXAGAI 253
           A+ IT+          AG +
Sbjct: 194 AIMITSILLLLTLPVLAGGL 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,979,962
Number of Sequences: 5004
Number of extensions: 31941
Number of successful extensions: 80
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)