Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060749.seq
         (661 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7Q6Q2 Cluster: Chromosome chr12 scaffold_57, whole gen...    38   0.16 
UniRef50_A7QTU3 Cluster: Chromosome undetermined scaffold_171, w...    34   2.6  
UniRef50_A4IH35 Cluster: Putative uncharacterized protein; n=6; ...    34   3.5  
UniRef50_A7QEJ0 Cluster: Chromosome chr17 scaffold_85, whole gen...    34   3.5  
UniRef50_A7Q5Q6 Cluster: Chromosome chr14 scaffold_54, whole gen...    34   3.5  
UniRef50_Q25442 Cluster: Transposase; n=4; Schizophora|Rep: Tran...    34   3.5  
UniRef50_Q25239 Cluster: Transposase; n=1; Lucilia cuprina|Rep: ...    34   3.5  
UniRef50_A7PKN6 Cluster: Chromosome chr7 scaffold_20, whole geno...    33   8.0  

>UniRef50_A7Q6Q2 Cluster: Chromosome chr12 scaffold_57, whole genome
           shotgun sequence; n=8; Vitis vinifera|Rep: Chromosome
           chr12 scaffold_57, whole genome shotgun sequence - Vitis
           vinifera (Grape)
          Length = 135

 Score = 38.3 bits (85), Expect = 0.16
 Identities = 19/43 (44%), Positives = 27/43 (62%)
 Frame = -2

Query: 297 IVISLLLAVPSSKTGWKDYSVFSNVKTDKRNRLSNETLNGLLH 169
           +VI +L  + SS      +SVF ++ T KRNRL NE LN L++
Sbjct: 20  LVIQILSQISSSFGCESTWSVFEHIHTKKRNRLKNERLNDLVY 62


>UniRef50_A7QTU3 Cluster: Chromosome undetermined scaffold_171,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome undetermined scaffold_171, whole genome
           shotgun sequence - Vitis vinifera (Grape)
          Length = 633

 Score = 34.3 bits (75), Expect = 2.6
 Identities = 14/43 (32%), Positives = 27/43 (62%)
 Frame = -2

Query: 297 IVISLLLAVPSSKTGWKDYSVFSNVKTDKRNRLSNETLNGLLH 169
           + I +L  V S+ T  + ++ F  + ++KRN++  ETLN L++
Sbjct: 515 VAIRILSQVCSTSTFERHWNTFQQIHSEKRNKIDKETLNDLVY 557


>UniRef50_A4IH35 Cluster: Putative uncharacterized protein; n=6;
           Xenopus tropicalis|Rep: Putative uncharacterized protein
           - Xenopus tropicalis (Western clawed frog) (Silurana
           tropicalis)
          Length = 281

 Score = 33.9 bits (74), Expect = 3.5
 Identities = 15/38 (39%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
 Frame = +1

Query: 481 YXTRGLLLNQPSL*FLYTTLFY-SFTCQLDLMSFSLHK 591
           Y  RGL++NQ  L FLY+++++ S +CQ   +S +++K
Sbjct: 176 YKNRGLVVNQTGLYFLYSSIYFRSTSCQSKELSHTVYK 213


>UniRef50_A7QEJ0 Cluster: Chromosome chr17 scaffold_85, whole genome
           shotgun sequence; n=3; Vitis vinifera|Rep: Chromosome
           chr17 scaffold_85, whole genome shotgun sequence - Vitis
           vinifera (Grape)
          Length = 203

 Score = 33.9 bits (74), Expect = 3.5
 Identities = 12/30 (40%), Positives = 23/30 (76%)
 Frame = -2

Query: 249 KDYSVFSNVKTDKRNRLSNETLNGLLHRKF 160
           +++S+F N+ + KRNRL ++ LN L++ K+
Sbjct: 124 RNWSIFENIHSKKRNRLDHQRLNDLVYIKY 153


>UniRef50_A7Q5Q6 Cluster: Chromosome chr14 scaffold_54, whole genome
           shotgun sequence; n=10; Vitis vinifera|Rep: Chromosome
           chr14 scaffold_54, whole genome shotgun sequence - Vitis
           vinifera (Grape)
          Length = 415

 Score = 33.9 bits (74), Expect = 3.5
 Identities = 15/45 (33%), Positives = 28/45 (62%)
 Frame = -2

Query: 294 VISLLLAVPSSKTGWKDYSVFSNVKTDKRNRLSNETLNGLLHRKF 160
           V++L  +  S +  W   S+F N+ + +RNRL ++ LN L++ K+
Sbjct: 237 VLNLTCSASSCERNW---SIFENIHSKRRNRLDHQRLNDLVYIKY 278


>UniRef50_Q25442 Cluster: Transposase; n=4; Schizophora|Rep:
           Transposase - Musca domestica (House fly)
          Length = 612

 Score = 33.9 bits (74), Expect = 3.5
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = -2

Query: 297 IVISLLLAVPSSKTGWKDYSVFSNVKTDKRNRLSNETLNGLL 172
           + +SLL    SS    + +S+  N+ T+KRNR+  +T++ LL
Sbjct: 557 LALSLLSIPASSAASERTFSLAGNIITEKRNRIGQQTVDSLL 598


>UniRef50_Q25239 Cluster: Transposase; n=1; Lucilia cuprina|Rep:
           Transposase - Lucilia cuprina (Greenbottle fly)
           (Australian sheep blowfly)
          Length = 581

 Score = 33.9 bits (74), Expect = 3.5
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -2

Query: 312 YENLVIVISLLLAVP-SSKTGWKDYSVFSNVKTDKRNRLSNETLNGLL 172
           Y  L      +LA+P SS    + +S   N+ T+KRNR+  +T+N LL
Sbjct: 525 YPRLYKFAQKILAIPASSAASERVFSAAGNIITEKRNRIGPKTVNNLL 572


>UniRef50_A7PKN6 Cluster: Chromosome chr7 scaffold_20, whole genome
           shotgun sequence; n=11; Vitis vinifera|Rep: Chromosome
           chr7 scaffold_20, whole genome shotgun sequence - Vitis
           vinifera (Grape)
          Length = 659

 Score = 32.7 bits (71), Expect = 8.0
 Identities = 11/30 (36%), Positives = 23/30 (76%)
 Frame = -2

Query: 249 KDYSVFSNVKTDKRNRLSNETLNGLLHRKF 160
           +++S+F N+ + +RNRL ++ LN L++ K+
Sbjct: 491 RNWSIFENIHSKRRNRLDHQRLNDLVYIKY 520


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 594,762,730
Number of Sequences: 1657284
Number of extensions: 11212398
Number of successful extensions: 21187
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 20630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21185
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50000004659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)