Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060749.seq
         (661 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    27   1.8  
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc...    27   3.2  
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ...    26   4.2  
SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner mem...    25   9.7  

>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +3

Query: 165 FYEASRSGFH*KACFFCQFLHLRTLNNLSTQSLKKELL 278
           F + S  GFH   C F   +H   L+ L TQ   KEL+
Sbjct: 523 FIDTSTGGFH--MCEFTDDIHRTKLDTLLTQVRPKELI 558


>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
           Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 596

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -2

Query: 225 VKTDKRNRLSNETLNGLLHRKFPTLPANNCSILE 124
           VK D   R++ ETL GLL  KF  +  + C I++
Sbjct: 405 VKEDSLKRITQETLLGLLDGKFKDI-FDKCIIID 437


>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
           subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 212 KETGFLMKP*TACFIESSQLCQQTIAQF*NRTVLG 108
           K+ GFL K  T CF+E+  +     + F N T +G
Sbjct: 126 KKAGFLKKA-TDCFVEAVSINPYNFSAFQNLTAIG 159


>SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner
           membrane translocase Oxa101|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 415 RTFIYLFSLMSPELTCIVIYRYFMY 341
           RTF +L  L+SP LT  +    FMY
Sbjct: 241 RTFFFLCCLLSPLLTAKLPAAIFMY 265


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,624,953
Number of Sequences: 5004
Number of extensions: 53446
Number of successful extensions: 122
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)