Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060749.seq
(661 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0544 + 30118208-30118417,30118959-30119063,30119179-301192... 33 0.20
12_02_0639 + 21443480-21443589,21444022-21444211,21444327-214444... 32 0.35
05_03_0187 + 9413575-9414895,9415014-9415289,9415513-9415631,941... 32 0.35
05_03_0065 - 7953414-7953845,7953963-7954081,7954158-7955990,795... 32 0.35
12_02_0642 + 21454142-21454251,21454683-21454872,21454988-214550... 31 0.61
12_02_0633 + 21402847-21402862,21403143-21404975,21405052-214051... 31 0.61
09_02_0396 - 8540532-8540549,8540656-8542129,8542217-8543121 31 0.61
01_04_0076 + 15780981-15780996,15781277-15783109,15783186-157833... 31 0.61
10_08_0173 + 15414628-15414890,15415001-15415074,15416322-154164... 29 3.3
10_06_0043 - 10026817-10027869 29 4.3
02_05_1217 + 34999631-34999945,35000670-35000835,35001908-350020... 29 4.3
11_02_0063 + 7916048-7917135,7917225-7918690,7920177-7920238,792... 28 7.6
11_02_0062 - 7909343-7909413,7909509-7910974,7911064-7912088,791... 28 7.6
04_02_0027 + 8715882-8715928,8716570-8716934,8717147-8717506,871... 28 7.6
>01_06_0544 +
30118208-30118417,30118959-30119063,30119179-30119260,
30119415-30121250,30121327-30121445,30121563-30122006
Length = 931
Score = 33.1 bits (72), Expect = 0.20
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = -2
Query: 327 HGNFIYENLVIVISLLLAVPSSKTGWKDYSVFSNVKTDKRNRLSNETLNGLLHRKF 160
HG + +L SS +++SVF V T KRNRL +E + L+ KF
Sbjct: 751 HGTSTLNLRKLAARILSLTCSSSACERNWSVFEQVHTKKRNRLLHERMRDLVFIKF 806
>12_02_0639 +
21443480-21443589,21444022-21444211,21444327-21444408,
21444563-21445054,21445221-21446246,21446470-21446588,
21446706-21447149
Length = 820
Score = 32.3 bits (70), Expect = 0.35
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = -2
Query: 327 HGNFIYENLVIVISLLLAVPSSKTGWKDYSVFSNVKTDKRNRLSNETLNGLLHRKF 160
HG + +L SS +++SVF V T KRNRL +E + L+ KF
Sbjct: 640 HGTSTPNLRKLAARILSLTCSSSACERNWSVFEQVHTKKRNRLLHERMRDLVFVKF 695
>05_03_0187 +
9413575-9414895,9415014-9415289,9415513-9415631,
9415749-9416192
Length = 719
Score = 32.3 bits (70), Expect = 0.35
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = -2
Query: 327 HGNFIYENLVIVISLLLAVPSSKTGWKDYSVFSNVKTDKRNRLSNETLNGLLHRKF 160
HG + +L SS +++SVF V T KRNRL +E + L+ KF
Sbjct: 539 HGTSTPNLRKLAARILSLTCSSSACERNWSVFEQVHTKKRNRLLHERMRDLVFVKF 594
>05_03_0065 -
7953414-7953845,7953963-7954081,7954158-7955990,
7957103-7957559
Length = 946
Score = 32.3 bits (70), Expect = 0.35
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = -2
Query: 327 HGNFIYENLVIVISLLLAVPSSKTGWKDYSVFSNVKTDKRNRLSNETLNGLLHRKF 160
HG + +L SS +++SVF V T KRNRL +E + L+ KF
Sbjct: 770 HGTSTPNLRKLAARILSLTCSSSACERNWSVFEQVHTKKRNRLLHERMRDLVFVKF 825
>12_02_0642 +
21454142-21454251,21454683-21454872,21454988-21455069,
21455224-21455802,21455854-21456909,21457133-21457251,
21457369-21457812
Length = 859
Score = 31.5 bits (68), Expect = 0.61
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = -2
Query: 327 HGNFIYENLVIVISLLLAVPSSKTGWKDYSVFSNVKTDKRNRLSNETLNGLLHRKF 160
HG + +L SS +++SVF V T KRNRL +E + L+ KF
Sbjct: 679 HGTSTPNLRKLAARILSLTCSSLACERNWSVFEQVHTKKRNRLLHERMRDLVFVKF 734
>12_02_0633 +
21402847-21402862,21403143-21404975,21405052-21405170,
21405288-21405722
Length = 800
Score = 31.5 bits (68), Expect = 0.61
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = -2
Query: 327 HGNFIYENLVIVISLLLAVPSSKTGWKDYSVFSNVKTDKRNRLSNETLNGLLHRKF 160
HG + +L SS +++SVF V T KRNRL +E + L+ KF
Sbjct: 623 HGTSTPNLRKLAARILSLTCSSSACERNWSVFEQVHTKKRNRLLHERMRDLVCVKF 678
>09_02_0396 - 8540532-8540549,8540656-8542129,8542217-8543121
Length = 798
Score = 31.5 bits (68), Expect = 0.61
Identities = 16/43 (37%), Positives = 28/43 (65%)
Frame = -2
Query: 300 VIVISLLLAVPSSKTGWKDYSVFSNVKTDKRNRLSNETLNGLL 172
+I +SL+L V ++ + +S S +KTD RN++ +E LN L+
Sbjct: 715 LIELSLILPVATASVE-RVFSAMSLIKTDLRNKMGDEWLNDLM 756
>01_04_0076 +
15780981-15780996,15781277-15783109,15783186-15783304,
15783422-15783724
Length = 756
Score = 31.5 bits (68), Expect = 0.61
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = -2
Query: 327 HGNFIYENLVIVISLLLAVPSSKTGWKDYSVFSNVKTDKRNRLSNETLNGLLHRKF 160
HG + +L SS +++SVF V T KRNRL +E + L+ KF
Sbjct: 623 HGTSTPNLRKLAARILSLTCSSLACERNWSVFEQVDTKKRNRLLHERMRDLVFVKF 678
>10_08_0173 +
15414628-15414890,15415001-15415074,15416322-15416401,
15417186-15417231,15417334-15417368,15417751-15417771,
15418418-15419133,15419292-15419324,15419517-15419813,
15420213-15420659,15420738-15420886,15421408-15421697,
15421774-15421898,15422006-15422156
Length = 908
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = -3
Query: 452 LGIPQNPNKYNPPNFYLPIFVDVTRTYLYCNIQVLHVP 339
LGI + P + NPP++Y+ I +T+T + + H+P
Sbjct: 557 LGI-KVPERENPPDYYIDILEGITKTKMRGHAAPKHLP 593
>10_06_0043 - 10026817-10027869
Length = 350
Score = 28.7 bits (61), Expect = 4.3
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Frame = -1
Query: 427 SIIRRTFIYLFSLMSPELTCIVIYRYFMYHERLSW---*FHLRKPCNCHFTFASSSFFKD 257
SI ++YL L EL C+ + M HE L W F LR +T + F +
Sbjct: 49 SIGENPYLYLRDL---ELVCLCLSIVGMTHETLKWKLFPFSLRDKAKQWYTMSVKKFHGE 105
Query: 256 WVE 248
W E
Sbjct: 106 WEE 108
>02_05_1217 +
34999631-34999945,35000670-35000835,35001908-35002005,
35002245-35002319,35002413-35002481,35002552-35002637,
35002710-35002827,35003575-35003902,35003995-35005682,
35005822-35005881,35005953-35006027,35006105-35006197,
35006298-35006372,35006464-35006532,35006614-35006682,
35006994-35007113
Length = 1167
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = -1
Query: 283 FASSSFFKDWVERLFSVLKCKN*QKKQ 203
++SSSF K W+E+L + K KN + K+
Sbjct: 741 YSSSSFLKPWLEKLALLFKDKNSKLKE 767
>11_02_0063 +
7916048-7917135,7917225-7918690,7920177-7920238,
7921808-7922407
Length = 1071
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/51 (31%), Positives = 31/51 (60%)
Frame = -2
Query: 333 DYHGNFIYENLVIVISLLLAVPSSKTGWKDYSVFSNVKTDKRNRLSNETLN 181
D H F +I ++L+L V ++ T + +S + +KT+ RN++++E LN
Sbjct: 764 DRHTVFPLVYRLIELALILPVATA-TVERAFSAMNIIKTELRNKMADEWLN 813
>11_02_0062 - 7909343-7909413,7909509-7910974,7911064-7912088,
7912300-7912809,7913418-7913441,7913617-7913673
Length = 1050
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/51 (31%), Positives = 31/51 (60%)
Frame = -2
Query: 333 DYHGNFIYENLVIVISLLLAVPSSKTGWKDYSVFSNVKTDKRNRLSNETLN 181
D H F +I ++L+L V ++ T + +S + +KT+ RN++++E LN
Sbjct: 940 DRHTVFPLVYRLIELALILPVATA-TVERAFSAMNIIKTELRNKMADEWLN 989
>04_02_0027 +
8715882-8715928,8716570-8716934,8717147-8717506,
8718063-8718576,8718657-8718684
Length = 437
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = -2
Query: 339 MKDYHGNFIYENLVIVISLLLAVP-SSKTGWKDYSVFSNVKTDKRNRLSNETLNGLL 172
M++ + Y + ++ L+L +P ++ T + +S NVKT RN++ +E L+ L
Sbjct: 340 MEETRKHLCYPLVYQLLKLVLVLPVATATVERCFSAMKNVKTYLRNKIGDEYLSDSL 396
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,246,824
Number of Sequences: 37544
Number of extensions: 279995
Number of successful extensions: 448
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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