Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060749.seq
         (661 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48080| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.36 
SB_48283| Best HMM Match : ABC-3 (HMM E-Value=2.4)                     31   0.63 
SB_38391| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_510| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   7.7  
SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)                 28   7.7  
SB_1137| Best HMM Match : CC (HMM E-Value=2)                           28   7.7  

>SB_48080| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 514

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = -3

Query: 452 LGIPQNPNKYNPPNFYLPIFV 390
           LG P NP  YNPP  YLP+ V
Sbjct: 225 LGTPSNPFDYNPPEGYLPLRV 245


>SB_48283| Best HMM Match : ABC-3 (HMM E-Value=2.4)
          Length = 745

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 18/66 (27%), Positives = 29/66 (43%)
 Frame = -2

Query: 300 VIVISLLLAVPSSKTGWKDYSVFSNVKTDKRNRLSNETLNGLLHRKFPTLPANNCSILEP 121
           ++ + L + V   K+ W     + NV   K + + N  +   L   +PT       IL P
Sbjct: 344 LVYLGLRIRVIQKKSAWDQAKKYENVAGTKSSCIRNICV--FLFATYPTTCTKIIQILPP 401

Query: 120 NSVRLC 103
           N V+LC
Sbjct: 402 NCVQLC 407


>SB_38391| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 206

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -2

Query: 273 VPSSKTGWKDYSVFSNVKTDKRNRLSNETLNGLLHRKF 160
           VP+  T WK+Y V +   T K+N    E L   +H  F
Sbjct: 73  VPTFLTIWKNYIVIAKELTLKKNYRKKEKLKNYIHIHF 110


>SB_510| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1907

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 44   IYRIRIFKEVDALLLYSFAAHNLTLFGSKIEQLFAGK 154
            I +++    VD ++LYS +A  + +F   +EQ   GK
Sbjct: 1281 IIKLKGMVHVDIIVLYSLSAQAVNIFDEALEQGMTGK 1317


>SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)
          Length = 419

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -3

Query: 170 IESSQLCQQTIAQF*NRTVLGCVQQKNIK 84
           +ES++ C+Q I  F  + + GC+Q+  +K
Sbjct: 226 MESAEKCEQVIKDFNKKMLPGCIQELVVK 254


>SB_1137| Best HMM Match : CC (HMM E-Value=2)
          Length = 410

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -2

Query: 351 TSCTMKDYHGNFIYENLVIVISLLLAVP 268
           + C  + Y  NF+  N ++ ++L+LAVP
Sbjct: 96  SKCFSRAYFYNFVSRNAILTMALVLAVP 123


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,380,049
Number of Sequences: 59808
Number of extensions: 355125
Number of successful extensions: 506
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)