Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060749.seq
         (661 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF406650-1|AAK95655.1|  392|Homo sapiens putative gap junction p...    32   1.6  
BC113087-1|AAI13088.1|  254|Homo sapiens LOC643641 protein protein.    30   6.4  
BC111541-1|AAI11542.1|  256|Homo sapiens ABCG5 protein protein.        30   6.4  
AF320293-1|AAG40003.1|  651|Homo sapiens ABCG5 protein.                30   6.4  
AF312715-1|AAG53099.1|  651|Homo sapiens sterolin protein.             30   6.4  
AB011115-1|BAA25469.1| 1111|Homo sapiens KIAA0543 protein protein.     30   6.4  

>AF406650-1|AAK95655.1|  392|Homo sapiens putative gap junction
           protein pannexin 3 protein.
          Length = 392

 Score = 32.3 bits (70), Expect = 1.6
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +2

Query: 335 FMVHEVPVYYNTS-KFW*HQRK*VNKSSADYTYWDSGESLRKKQWLNL*FTLLEGY 499
           F++ E+   YN S +   H  K   KSS  Y +W+  E  RK+++    F LLE Y
Sbjct: 142 FIISELDKSYNRSIRLVQHMLKIRQKSSDPYVFWNELEKARKERYFE--FPLLERY 195


>BC113087-1|AAI13088.1|  254|Homo sapiens LOC643641 protein protein.
          Length = 254

 Score = 30.3 bits (65), Expect = 6.4
 Identities = 13/42 (30%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
 Frame = -2

Query: 294 VISLLLAVP-SSKTGWKDYSVFSNVKTDKRNRLSNETLNGLL 172
           ++++++ VP S+    + +   + ++TD+R +LSNE LN L+
Sbjct: 110 LMAVVVCVPISTSCCERGFKAMNRIRTDERTKLSNEVLNMLM 151


>BC111541-1|AAI11542.1|  256|Homo sapiens ABCG5 protein protein.
          Length = 256

 Score = 30.3 bits (65), Expect = 6.4
 Identities = 20/53 (37%), Positives = 25/53 (47%)
 Frame = -3

Query: 464 TAFFLGIPQNPNKYNPPNFYLPIFVDVTRTYLYCNIQVLHVP*KIIMVISFTK 306
           T   LGI QNPN  N     L I   +  +    NIQ + +P KII   +F K
Sbjct: 122 TLVLLGIVQNPNIVNSVVALLSIAGVLVGSGFLRNIQEMPIPFKIISYFTFQK 174


>AF320293-1|AAG40003.1|  651|Homo sapiens ABCG5 protein.
          Length = 651

 Score = 30.3 bits (65), Expect = 6.4
 Identities = 20/53 (37%), Positives = 25/53 (47%)
 Frame = -3

Query: 464 TAFFLGIPQNPNKYNPPNFYLPIFVDVTRTYLYCNIQVLHVP*KIIMVISFTK 306
           T   LGI QNPN  N     L I   +  +    NIQ + +P KII   +F K
Sbjct: 517 TLVLLGIVQNPNIVNSVVALLSIAGVLVGSGFLRNIQEMPIPFKIISYFTFQK 569


>AF312715-1|AAG53099.1|  651|Homo sapiens sterolin protein.
          Length = 651

 Score = 30.3 bits (65), Expect = 6.4
 Identities = 20/53 (37%), Positives = 25/53 (47%)
 Frame = -3

Query: 464 TAFFLGIPQNPNKYNPPNFYLPIFVDVTRTYLYCNIQVLHVP*KIIMVISFTK 306
           T   LGI QNPN  N     L I   +  +    NIQ + +P KII   +F K
Sbjct: 517 TLVLLGIVQNPNIVNSVVALLSIAGVLVGSGFLRNIQEMPIPFKIISYFTFQK 569


>AB011115-1|BAA25469.1| 1111|Homo sapiens KIAA0543 protein protein.
          Length = 1111

 Score = 30.3 bits (65), Expect = 6.4
 Identities = 13/42 (30%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
 Frame = -2

Query: 294  VISLLLAVP-SSKTGWKDYSVFSNVKTDKRNRLSNETLNGLL 172
            ++++++ VP S+    + +   + ++TD+R +LSNE LN L+
Sbjct: 967  LMAVVVCVPISTSCCERGFKAMNRIRTDERTKLSNEVLNMLM 1008


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,848,811
Number of Sequences: 237096
Number of extensions: 1766181
Number of successful extensions: 3030
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3027
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7422585720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)