Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060749.seq
         (661 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M69216-2|AAA51465.1|  661|Drosophila melanogaster HFL1 protein.        31   1.4  
AE014298-754|AAF46045.1|  640|Drosophila melanogaster CG15780-PA...    28   9.8  

>M69216-2|AAA51465.1|  661|Drosophila melanogaster HFL1 protein.
          Length = 661

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = -2

Query: 315 IYENLVIVISLLLAVP-SSKTGWKDYSVFSNVKTDKRNRLSNETLNGLL 172
           +Y  L  +   LL++P SS    + +S+  N+ T+KRNRL  ++++ LL
Sbjct: 600 LYPQLSKLALKLLSIPASSAAAERVFSLAGNIITEKRNRLCPKSVDSLL 648


>AE014298-754|AAF46045.1|  640|Drosophila melanogaster CG15780-PA
           protein.
          Length = 640

 Score = 28.3 bits (60), Expect = 9.8
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -2

Query: 294 VISLLLAVPSSKTGWKDYSVFSNVKTDKRNRLSNETLNGLLHR 166
           V+ +L +  S+ TG   YS   ++ T   NRL    + G+LHR
Sbjct: 481 VLRVLRSRDSAGTGMLPYSQLRHLLTTMGNRLDETEVYGVLHR 523


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,502,469
Number of Sequences: 53049
Number of extensions: 511511
Number of successful extensions: 914
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2827453950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)