Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060749.seq
         (661 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016450-11|AAB65981.1|  317|Caenorhabditis elegans Hypothetical...    31   0.96 
Z74032-6|CAA98468.2|  234|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AF016445-13|AAC69055.3|  371|Caenorhabditis elegans Ligand-gated...    28   6.8  
U53335-4|AAL27231.1|  504|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>AF016450-11|AAB65981.1|  317|Caenorhabditis elegans Hypothetical
           protein B0238.11 protein.
          Length = 317

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
 Frame = -2

Query: 276 AVPSSKTGWKD----YSVFSNVKTDKRNRLSNETLNGLLHRKFPTLPANNCSILEPNSVR 109
           + P  ++  KD    +S+F   K DK   LS+E     L +KF  LPA    I E  ++ 
Sbjct: 257 STPKKRSSKKDPETAFSLFCRTKNDKYRDLSDEEREIKLQKKFEKLPAAQKDIYESLAIS 316

Query: 108 L 106
           +
Sbjct: 317 M 317


>Z74032-6|CAA98468.2|  234|Caenorhabditis elegans Hypothetical
           protein F35B12.8 protein.
          Length = 234

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +2

Query: 53  IRIFKEVDALLLYSFAAHNLTLFGSKIEQLFAGKVGNF 166
           + IF E +  + YSF   NL     K+EQ F   VG F
Sbjct: 63  LTIFLEQEVEMAYSFGLENLNEQQLKVEQKFRTHVGKF 100


>AF016445-13|AAC69055.3|  371|Caenorhabditis elegans Ligand-gated
           ion channel protein 1 protein.
          Length = 371

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +1

Query: 529 YTTLFYSFTCQLDLMSFSLHKIKCSXXTXIIVYF 630
           YT+   S  CQLD+  F L + +C        YF
Sbjct: 146 YTSTVSSVICQLDVYKFPLDRHECGVSVLFHTYF 179


>U53335-4|AAL27231.1|  504|Caenorhabditis elegans Hypothetical
           protein C55C3.3 protein.
          Length = 504

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 446 IPQNPNKYNPPNFYLPI 396
           +P N NKYNPPN   P+
Sbjct: 431 LPVNFNKYNPPNLLDPV 447


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,254,506
Number of Sequences: 27780
Number of extensions: 288399
Number of successful extensions: 622
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)