Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060749.seq
(661 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.5
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.5
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.5
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.5
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.5
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.5
DQ869051-1|ABJ09598.1| 581|Apis mellifera pyrokinin-like recept... 22 4.5
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 4.5
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 4.5
AY739659-1|AAU85298.1| 288|Apis mellifera hyperpolarization-act... 22 6.0
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 22 6.0
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 22 6.0
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 22.2 bits (45), Expect = 4.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 430 ISIIRRTFIYLFSLMSPELTCIVI 359
I I RRT Y F+L+ P C++I
Sbjct: 188 IQIRRRTLYYFFNLIVP---CVLI 208
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 22.2 bits (45), Expect = 4.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 430 ISIIRRTFIYLFSLMSPELTCIVI 359
I I RRT Y F+L+ P C++I
Sbjct: 188 IQIRRRTLYYFFNLIVP---CVLI 208
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 22.2 bits (45), Expect = 4.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 430 ISIIRRTFIYLFSLMSPELTCIVI 359
I I RRT Y F+L+ P C++I
Sbjct: 188 IQIRRRTLYYFFNLIVP---CVLI 208
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 22.2 bits (45), Expect = 4.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 430 ISIIRRTFIYLFSLMSPELTCIVI 359
I I RRT Y F+L+ P C++I
Sbjct: 188 IQIRRRTLYYFFNLIVP---CVLI 208
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 22.2 bits (45), Expect = 4.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 430 ISIIRRTFIYLFSLMSPELTCIVI 359
I I RRT Y F+L+ P C++I
Sbjct: 188 IQIRRRTLYYFFNLIVP---CVLI 208
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 22.2 bits (45), Expect = 4.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 430 ISIIRRTFIYLFSLMSPELTCIVI 359
I I RRT Y F+L+ P C++I
Sbjct: 188 IQIRRRTLYYFFNLIVP---CVLI 208
>DQ869051-1|ABJ09598.1| 581|Apis mellifera pyrokinin-like receptor
2 protein.
Length = 581
Score = 22.2 bits (45), Expect = 4.5
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +3
Query: 516 FIVFIHNSVLFFYLSTRLNVIL 581
+ + + S +F+YLST +N +L
Sbjct: 326 YTILTYMSGVFYYLSTTVNPLL 347
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.2 bits (45), Expect = 4.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 430 ISIIRRTFIYLFSLMSPELTCIVI 359
I I RRT Y F+L+ P C++I
Sbjct: 256 IQIRRRTLYYFFNLIVP---CVLI 276
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.2 bits (45), Expect = 4.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 430 ISIIRRTFIYLFSLMSPELTCIVI 359
I I RRT Y F+L+ P C++I
Sbjct: 256 IQIRRRTLYYFFNLIVP---CVLI 276
>AY739659-1|AAU85298.1| 288|Apis mellifera
hyperpolarization-activated ion channelvariant T
protein.
Length = 288
Score = 21.8 bits (44), Expect = 6.0
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +2
Query: 518 YSFYTQLCFILLLV 559
+ FY LC +LLLV
Sbjct: 87 FRFYWDLCMLLLLV 100
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 21.8 bits (44), Expect = 6.0
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +2
Query: 518 YSFYTQLCFILLLV 559
+ FY LC +LLLV
Sbjct: 87 FRFYWDLCMLLLLV 100
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 21.8 bits (44), Expect = 6.0
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +2
Query: 518 YSFYTQLCFILLLV 559
+ FY LC +LLLV
Sbjct: 87 FRFYWDLCMLLLLV 100
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,622
Number of Sequences: 438
Number of extensions: 3844
Number of successful extensions: 14
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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