Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060749.seq
         (661 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g13920.1 68417.m02154 disease resistance family protein / LRR...    29   3.6  
At3g59340.1 68416.m06616 expressed protein identical to anthocya...    28   4.8  

>At4g13920.1 68417.m02154 disease resistance family protein / LRR
           family protein contains leucine rich-repeat domains
           Pfam:PF00560, INTERPRO:IPR001611; similar to Cf-2.2
           [Lycopersicon pimpinellifolium] gi|1184077|gb|AAC15780
          Length = 891

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 20/74 (27%), Positives = 33/74 (44%)
 Frame = -2

Query: 396 FR*CHQNLLVL*YTGTSCTMKDYHGNFIYENLVIVISLLLAVPSSKTGWKDYSVFSNVKT 217
           FR  H   L L Y   SCT+ D  GNF Y  ++ ++   L      T  +  S  +++  
Sbjct: 102 FRLQHLQSLDLSYNDLSCTLPDSSGNFKYLRVLNLLGCNL-FGEIPTSLRSLSYLTDLDL 160

Query: 216 DKRNRLSNETLNGL 175
              + L+ E L+ +
Sbjct: 161 SYNDDLTGEILDSM 174


>At3g59340.1 68416.m06616 expressed protein identical to
           anthocyanin-related membrane protein 3 (GI:16416387)
           [Arabidopsis thaliana]
          Length = 333

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/32 (31%), Positives = 22/32 (68%)
 Frame = -1

Query: 406 IYLFSLMSPELTCIVIYRYFMYHERLSW*FHL 311
           ++  SL++ ++  ++I R F YHE++ W ++L
Sbjct: 259 MFTLSLLTSDMWAVLI-RIFAYHEKVDWLYYL 289


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,067,891
Number of Sequences: 28952
Number of extensions: 255753
Number of successful extensions: 468
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)