Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060748.seq
         (670 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    25   0.74 
AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    22   5.2  
AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory recept...    22   5.2  
AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory recept...    22   5.2  

>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 24.6 bits (51), Expect = 0.74
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 584 INKCVQAGDYYYWPNWPKGQGF 649
           +  CV+  + Y W N P G GF
Sbjct: 512 LQTCVRCPNNYPWVNDPTGDGF 533


>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = +1

Query: 445 IRRPRLGVGK*RFLHFCKTFHLKKHYEVIQKYINFENFF 561
           ++ PR+ V     + +  T  L++ +++I   I  E FF
Sbjct: 36  VQYPRIVVSTFNIVFYMYTLILEERFKLINLIIKQEEFF 74


>AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory receptor
           candidate 18 protein.
          Length = 387

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -1

Query: 250 LLISYVLSSGTSFK 209
           L++  VLSSGT+FK
Sbjct: 83  LMVVAVLSSGTTFK 96


>AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory receptor
           candidate 17 protein.
          Length = 372

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -1

Query: 250 LLISYVLSSGTSFK 209
           L++  VLSSGT+FK
Sbjct: 83  LMVVAVLSSGTTFK 96


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,698
Number of Sequences: 336
Number of extensions: 3517
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17385535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)