Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060748.seq
         (670 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    28   1.1  
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...    27   3.2  
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...    26   4.3  
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi...    26   5.6  
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    25   7.5  
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p...    25   9.9  
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch...    25   9.9  
SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.9  
SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    25   9.9  

>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 317 VNNFQQFLNTIRNNFNGPCAKHDMGSSCEDTE 412
           +N + + L+ ++NNF G   K     SC DTE
Sbjct: 212 LNEYYKSLSKLKNNFRGIIYKTTPYGSCNDTE 243


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 364 RSVRKTRHGLVLRRHRRSYRKTGSSTNIRRPRLGVGK*R 480
           +S +KT+  + L +  ++YR      N R+ R G GK R
Sbjct: 159 QSFQKTKEAVALLKEIKAYRDVVKVANSRKLRAGKGKLR 197


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 364 RSVRKTRHGLVLRRHRRSYRKTGSSTNIRRPRLGVGK*R 480
           +S +KT+  + L +  ++YR      N R+ R G GK R
Sbjct: 159 QSFQKTKEAVALLKEIKAYRDVIKVANSRKLRAGKGKLR 197


>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 680

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 551 KIFSRAPTLGYINKCVQAGDYYYW 622
           + +SRA   G I+   + GDYYY+
Sbjct: 553 EFYSRAAAQGDIDAIFKLGDYYYY 576


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 305 LFEYVNNFQQFLNTIRNNFNGPCAKHDMGSSCEDTEEAT 421
           L E++ + ++   +  ++FN   A  DM  S E TEEAT
Sbjct: 557 LDEFIQSGEEVEWSNFSHFNAESALADMNDSVEVTEEAT 595


>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 202

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +2

Query: 338 LNTIRNNFNGPCAKHDMGSSCEDTEEATEKQAVQQTLDGHDWVLESN 478
           L + + N +G  AKHD+     D   + + Q++Q   D     ++SN
Sbjct: 29  LTSRKYNTHGLGAKHDIADQWWDNVFSAQLQSIQVNTDNGKVAVQSN 75


>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 872

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +1

Query: 490 FCKTFHLKKHYEVIQKYINFENFFKSTDPGIH*QMC 597
           F   FH ++ YE++   I++ N     D  IH   C
Sbjct: 834 FSSAFHTEEVYEILHSRIDWLNIKYEVDKVIHGLAC 869


>SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 287

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -2

Query: 471 SNTQSWPSNVC*TACFSVASSVSSQDEPMSCFAHGPLKL 355
           S  +  PSN    +  S  S VS    P SC  H P ++
Sbjct: 145 SEKEEIPSNASSISLKSQNSIVSRTSNPFSCLNHSPRQI 183


>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 655 KEKALPFGPVGPIIVIARLHTFVNVSQG 572
           K +A+PF  +   I+  RLHTF  V+ G
Sbjct: 265 KLRAIPFQDLADNILNLRLHTFRAVTDG 292


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,773,902
Number of Sequences: 5004
Number of extensions: 56334
Number of successful extensions: 132
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)