Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060748.seq
         (670 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9266| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.6  
SB_49352| Best HMM Match : BDS_I_II (HMM E-Value=2.3)                  29   3.4  
SB_51313| Best HMM Match : Pkinase (HMM E-Value=0.43)                  28   7.9  
SB_36542| Best HMM Match : Pox_A_type_inc (HMM E-Value=7.3e-11)        28   7.9  

>SB_9266| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1490

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = -2

Query: 603  ACTHLLMYPRVGALEKIFKINIFLYDF-IVLLQMKGFTKMQKSLLSNTQSWPSNVC 439
            A  H   YPR+   +++FK+N F + + I++     F  +  S + NT  W + VC
Sbjct: 867  AMKHTFEYPRIVTTQRVFKVNAFAWAWAIIVAATDSFPVL--SAIYNT-IWVACVC 919


>SB_49352| Best HMM Match : BDS_I_II (HMM E-Value=2.3)
          Length = 312

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
 Frame = +2

Query: 212 KRRA*RQNVRD*-QLEDANHLIIRNTRTGTRRLFEYVNNFQQFLNTIRNNFNGPCAKHDM 388
           +RR  ++  R+  Q+  ++ +  R+ R   R L +   NF +F+N   N FN     +  
Sbjct: 104 RRRGEQEQQREYWQVNKSSQIASRSWRVRLRALKKIKTNFGKFVNPYANRFNNGIPTYSE 163

Query: 389 GSSCEDTEEATEKQAVQQ 442
             S E      +++A ++
Sbjct: 164 ERSLERARRKEKERAAEE 181


>SB_51313| Best HMM Match : Pkinase (HMM E-Value=0.43)
          Length = 456

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +2

Query: 422 EKQAVQQTLDGHDWVLESNDFCIFVKPFI*RSTMKSYKNI 541
           EKQ V   LDG  W +ES   C+ +  F      K  KN+
Sbjct: 175 EKQLVYM-LDGERWTVESRGLCVSLIDFTLSRLRKVKKNV 213


>SB_36542| Best HMM Match : Pox_A_type_inc (HMM E-Value=7.3e-11)
          Length = 1500

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 311 EYVNNFQQFLNTIRNNF-NGPCAKHDMGSSCEDTEEAT 421
           E  N+ Q+ L T+RNNF N   ++HD+       EE T
Sbjct: 516 ELNNSLQRQLETLRNNFINRSPSRHDLEELARLREEVT 553


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,268,985
Number of Sequences: 59808
Number of extensions: 410362
Number of successful extensions: 1091
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1087
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)