Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060748.seq
         (670 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            23   1.0  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            23   1.0  

>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 23.4 bits (48), Expect(2) = 1.0
 Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
 Frame = +2

Query: 290  TGTRRL-FEYVNNFQQFLNTIRNNFNGPCAKHDMGSSCEDTEEATEKQAVQQTLD 451
            TG RR   EYV N  +  +  R NF       +     E  EE    +A  + ++
Sbjct: 2428 TGFRRYRLEYVKNTNKISSVYRTNFAARSGLDETRYQVEHDEEGNVVRATHKGIE 2482



 Score = 20.6 bits (41), Expect(2) = 1.0
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 158  EKYKHDSQND*QHFTIFFKR 217
            + YK D+  + QHF   F+R
Sbjct: 2413 QSYKIDANGNHQHFYTGFRR 2432


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 23.4 bits (48), Expect(2) = 1.0
 Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
 Frame = +2

Query: 290  TGTRRL-FEYVNNFQQFLNTIRNNFNGPCAKHDMGSSCEDTEEATEKQAVQQTLD 451
            TG RR   EYV N  +  +  R NF       +     E  EE    +A  + ++
Sbjct: 2429 TGFRRYRLEYVKNTNKISSVYRTNFAARSGLDETRYQVEHDEEGNVVRATHKGIE 2483



 Score = 20.6 bits (41), Expect(2) = 1.0
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 158  EKYKHDSQND*QHFTIFFKR 217
            + YK D+  + QHF   F+R
Sbjct: 2414 QSYKIDANGNHQHFYTGFRR 2433


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 694,927
Number of Sequences: 2352
Number of extensions: 13265
Number of successful extensions: 50
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 66904800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)