Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060748.seq
         (670 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68114-8|CAA92162.1|  317|Caenorhabditis elegans Hypothetical pr...    29   3.9  
U49830-13|AAK31474.1|  826|Caenorhabditis elegans Hypothetical p...    27   9.1  

>Z68114-8|CAA92162.1|  317|Caenorhabditis elegans Hypothetical
           protein F17A2.11 protein.
          Length = 317

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 27/106 (25%), Positives = 44/106 (41%)
 Frame = -2

Query: 588 LMYPRVGALEKIFKINIFLYDFIVLLQMKGFTKMQKSLLSNTQSWPSNVC*TACFSVASS 409
           + YP   AL  +F   IFL+  +V    K    ++  L  N      +V    C      
Sbjct: 8   IFYPIFLAL--VFPTQIFLFVVVVKYSPKYMQTLRNVLFCNCIFQTISVV-LLCLLQLRQ 64

Query: 408 VSSQDEPMSCFAHGPLKLFLIVFKNC*KLLTYSNNLRVPVRVFLMI 271
           VS   +PM  + +GPL+ F  +   C   ++ S ++   + V L I
Sbjct: 65  VSHL-KPMEIWCYGPLRHFEAIISYCLYFVSQSTSVVSNILVLLTI 109


>U49830-13|AAK31474.1|  826|Caenorhabditis elegans Hypothetical
           protein C33F10.2 protein.
          Length = 826

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +1

Query: 490 FCKTFHLKKHYEVIQKYIN-FENFFKSTDPGIH 585
           +C  F+LK + EVI++Y+  F +    TDP ++
Sbjct: 560 YCHKFYLKDNSEVIKEYLGIFYHLVAYTDPVLY 592


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,390,291
Number of Sequences: 27780
Number of extensions: 319166
Number of successful extensions: 704
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)