Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060748.seq
         (670 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    24   1.1  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   2.0  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   3.5  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   4.6  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              22   6.1  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   6.1  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 517 HYEVIQKYINFENFF 561
           H+  + KYINF+ FF
Sbjct: 2   HFNNVIKYINFDRFF 16


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -1

Query: 505 ERFYKNAKIVTFQ 467
           + F+KNAK VTFQ
Sbjct: 122 DSFFKNAKSVTFQ 134


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 526 LHSASSNERFYKNAKIVTF 470
           LH+    + F+KNAK VTF
Sbjct: 84  LHNIWRPDCFFKNAKKVTF 102


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 567 HRPWDTLTNVCKRAITIIG 623
           H PW+   NV + A  IIG
Sbjct: 462 HEPWNAPLNVQRAAKCIIG 480


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 394 RAHVVFCARTVKVVSNCV 341
           +AHV+    T K++ NCV
Sbjct: 16  QAHVIPAELTAKLLGNCV 33


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 131 QKSPSIFT*NKNANKRFQQH 72
           Q+SP +   N +  KR+Q+H
Sbjct: 84  QQSPYLMYENPDEEKRYQEH 103


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,040
Number of Sequences: 438
Number of extensions: 3835
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)