Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060748.seq
         (670 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g28650.1 68416.m03576 DC1 domain-containing protein  similar ...    29   2.8  
At3g05750.1 68416.m00646 expressed protein                             29   2.8  
At2g43930.1 68415.m05460 protein kinase family protein contains ...    29   3.7  
At5g24550.1 68418.m02899 glycosyl hydrolase family 1 protein con...    28   6.5  
At3g45190.1 68416.m04877 SIT4 phosphatase-associated family prot...    28   6.5  
At3g27510.1 68416.m03439 DC1 domain-containing protein contains ...    28   6.5  
At3g19470.1 68416.m02468 F-box family protein contains F-box dom...    28   6.5  
At5g24540.1 68418.m02898 glycosyl hydrolase family 1 protein con...    27   8.5  
At5g10060.1 68418.m01165 expressed protein                             27   8.5  
At3g22770.1 68416.m02871 F-box family protein-related contains T...    27   8.5  

>At3g28650.1 68416.m03576 DC1 domain-containing protein  similar to
           hypothetical protein GI:4204272 from [Arabidopsis
           thaliana] contains weak PHD zinc finger motifs contains
           weak PHD zinc finger motifs DC1 domain, a divergent
           protein kinase C domain of unknown function.
          Length = 665

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
 Frame = -3

Query: 620 NNSNRPLAHIC*C-IPGSVLLKKFSK---LIYFCMT 525
           N S+RPL H C C  PG  +LK F +     Y+C +
Sbjct: 609 NRSSRPLCHNCHCHCPGPFILKDFVEECFCSYYCFS 644


>At3g05750.1 68416.m00646 expressed protein
          Length = 798

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +2

Query: 311 EYVNNFQQFLNT-IRNNFNGPCAKHDMGSSCEDTEEATEKQAVQQTLDGHDWVLE 472
           E VN+F    N  I  + +   +++D   + E+TE  +E  A+ +  +GHDW LE
Sbjct: 592 EEVNSFSTAENLQISCSTSFSSSRNDYHHNIEETE-LSESVALSEAEEGHDWELE 645


>At2g43930.1 68415.m05460 protein kinase family protein contains
           similarity to NPK1-related protein kinase 2 GI:2342425
           from [Arabidopsis thaliana]
          Length = 204

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 127 NHHPFLHRIKTLIKDFNNTLLFGAYIQI 44
           +HH  LH IK LI++ + TLLF   + I
Sbjct: 2   DHHRRLHTIKILIRNSSTTLLFFKIVPI 29


>At5g24550.1 68418.m02899 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to anther-specific protein ATA27 (GI:2746341)
           [Arabidopsis thaliana]
          Length = 534

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 275 IRNTRTGTRRLFEYVNNFQQFLNTIRNNFNGP 370
           I +   GT+ L+ Y    ++ LN I+N +N P
Sbjct: 380 ISSESDGTKILWSYPEGLRKLLNYIKNKYNNP 411


>At3g45190.1 68416.m04877 SIT4 phosphatase-associated family protein
           contains Pfam profile: PF04499 SIT4
           phosphatase-associated protein
          Length = 830

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
 Frame = +2

Query: 254 EDANHLIIRNTRTGTRRLFEYVNNFQQFLNTIRNNFNGPCAKHDMGSSCEDTEEATEKQA 433
           +++  ++I + R G     E  NN   F N+    F G     + G+    +EEA E  +
Sbjct: 599 DESAEVVISSLRLGD----EQANNL--FTNSNWFTFQGDELGENTGTGAISSEEAMEDVS 652

Query: 434 VQQTLDGHDWVLESNDFCIFVK---PFI 508
           + +T DG D   E  D C+  +   PF+
Sbjct: 653 LNETSDGGDEEDEDED-CLITESKNPFV 679


>At3g27510.1 68416.m03439 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 566

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = -3

Query: 620 NNSNRPLAHIC*C-IPGSVLLK 558
           N+S+RPL H C C  PGS +L+
Sbjct: 520 NSSSRPLCHNCHCRCPGSFILR 541


>At3g19470.1 68416.m02468 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 382

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -3

Query: 194 VVNHFGYRVYIFRVNLFNNFDQKSPSIFT*NKNANKR 84
           VV    +RVY+ RVNL NN  + S S  + + +  KR
Sbjct: 59  VVLMMNFRVYLMRVNLQNNVVESSSSSSSSSSSCIKR 95


>At5g24540.1 68418.m02898 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to amygdalin hydrolase isoform AH I precursor
           (GI:16757966) [Prunus serotina]
          Length = 534

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 293 GTRRLFEYVNNFQQFLNTIRNNFNGP 370
           GT+ L+ Y    ++ LN I+N +N P
Sbjct: 386 GTKILWSYPEGLRKILNYIKNKYNNP 411


>At5g10060.1 68418.m01165 expressed protein
          Length = 469

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
 Frame = +3

Query: 210 LKDVPEDKTYEINNLKMQI-I*SLETREQEHADCLSTLTIFNSS*TQLETTLTVRAQNTT 386
           LKD   ++  E++NLK QI +   +T E ++         + S  T   TT+T    NT 
Sbjct: 255 LKDALREQESELDNLKAQIQVAKEQTEEAQNMQKRLNDEDYTSKQTTAATTITETNDNTK 314

Query: 387 WARLAK-TPKKL 419
             + +K TP  +
Sbjct: 315 SGQASKMTPASI 326


>At3g22770.1 68416.m02871 F-box family protein-related contains
           TIGRFAM TIGR01640: F-box protein interaction domain
          Length = 327

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 194 VVNHFGYRVYIFRVNLFNNFDQKSPS 117
           VV    +RVY+ RVNL NN  + S S
Sbjct: 2   VVMMMNFRVYLMRVNLDNNVVESSSS 27


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,044,329
Number of Sequences: 28952
Number of extensions: 274773
Number of successful extensions: 603
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)