Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060744.seq
(661 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 27 1.8
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 27 1.8
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb... 26 4.2
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc... 26 5.5
SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase |Schiz... 26 5.5
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe... 26 5.5
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom... 25 7.3
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa... 25 7.3
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 9.7
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos... 25 9.7
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 27.5 bits (58), Expect = 1.8
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = +1
Query: 313 LITKSGVIQLIMKSKLPYAIELQEWLL 393
L+ K GV+ L+ K KLP+++ ++ ++
Sbjct: 542 LLVKDGVVHLVDKVKLPFSVSQKDMII 568
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 27.5 bits (58), Expect = 1.8
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +3
Query: 198 STSTASTNRRLSMPTKSSTCSR*RGKAGRPAVFAPTHSAHYQI 326
S+S+ S++R S T T S + + RP VF T +HY I
Sbjct: 163 SSSSKSSSRSSSRTTSHRTTSH-KSSSYRPTVFPYTTISHYNI 204
>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 26.2 bits (55), Expect = 4.2
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 177 IVNGQYVSTSTASTNRRLSMPTKSSTCS 260
I G Y STS +ST+ + P+ SST S
Sbjct: 129 ISGGIYSSTSASSTSSSTATPSSSSTTS 156
>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
Mis17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 441
Score = 25.8 bits (54), Expect = 5.5
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Frame = +1
Query: 514 DLAEANRSLILF----ANEMIVARRDAETARQDCXNARRETAQWXN 639
DL +ANR L ANE + +RD R+D + +R+ Q N
Sbjct: 318 DLLDANRILSTACKKAANEKLAVQRDLSKLREDRLSVQRKKIQLRN 363
>SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 369
Score = 25.8 bits (54), Expect = 5.5
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Frame = +2
Query: 353 PNC-LTP*NYK-NGFWRRSFLKCYARSKYAPAVEMDTNDVIAKIDDLTQKLTVATQIWRK 526
P C L P N + GF + Y PAV +D D + ++T+ T+ T++++
Sbjct: 52 PTCYLCPGNIRATGFENPKYETTYVFPNDYPAVRVDQPDYMQDESEITKGNTLKTRMFKT 111
Query: 527 QTDRSFC 547
+ + C
Sbjct: 112 EGVKGKC 118
>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 716
Score = 25.8 bits (54), Expect = 5.5
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +1
Query: 508 HADLAEANRSLILFANEMIVARRDAETARQD 600
H E +FANE+++ + DA++ +QD
Sbjct: 544 HKKNPELGNKKSIFANEILIEQADAQSFKQD 574
>SPBC354.13 |rga6||GTPase activating protein
Rga6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 733
Score = 25.4 bits (53), Expect = 7.3
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -3
Query: 587 VSASRRATIISLANKMSDRFASAKSAWPPSIFASDRQF 474
+ S+ + +S N++S +PPS F S RQF
Sbjct: 198 LQTSQDSPSLSATNQLSSSDTLEPLQYPPSSFGSQRQF 235
>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 669
Score = 25.4 bits (53), Expect = 7.3
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +2
Query: 116 GDEQPVRFVAKDIASSLKYVNCERAIRVHVDGKYKSTFEHAD 241
GDE V+ D S V+ + ++ GKY+ TF H D
Sbjct: 48 GDEIECIVVSMDDKSKKARVSLRQEDILNALGKYEETFRHVD 89
>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 646
Score = 25.0 bits (52), Expect = 9.7
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -3
Query: 197 HVLPVHNLHILNCW 156
HVLP+ L +LNC+
Sbjct: 405 HVLPIRQLFLLNCY 418
>SPCC1322.12c |bub1||serine/threonine protein kinase
Bub1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1044
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -3
Query: 239 RHAQTSICTCRRRGHVLPVHNLHILN 162
R A T + R +LPVH LH+ +
Sbjct: 776 RQAMTRLKGLRETNSILPVHQLHMFH 801
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,747,370
Number of Sequences: 5004
Number of extensions: 57411
Number of successful extensions: 150
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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