Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060744.seq
(661 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_02_0110 - 5371536-5372882 33 0.27
06_01_0008 + 141405-142421 31 0.61
02_01_0599 - 4455151-4455915,4455999-4456098,4456176-4456222,445... 29 2.5
11_03_0026 - 9057965-9058234,9059410-9059522,9059612-9059802,906... 29 3.3
09_06_0072 - 20682424-20682870,20683928-20684854 28 5.7
07_01_0245 - 1803170-1803887,1803971-1804641 28 5.7
04_01_0083 + 904473-905167,905247-905347,905902-905994,907322-90... 28 5.7
01_03_0010 - 11608537-11608786,11608816-11608940,11609152-116092... 28 5.7
09_04_0160 + 15226762-15227032,15227138-15227373,15227469-152275... 28 7.6
06_02_0101 - 11816507-11816878,11817571-11817840,11818014-118180... 28 7.6
03_04_0104 + 17315751-17315940,17316255-17316343,17316892-173170... 28 7.6
01_06_1510 - 37859664-37861319 28 7.6
01_06_0996 + 33667663-33667900,33668019-33668091,33668785-336688... 28 7.6
>10_02_0110 - 5371536-5372882
Length = 448
Score = 32.7 bits (71), Expect = 0.27
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Frame = -3
Query: 335 ITPDLVMSTVCGCKY----SG-SPCFATLSGAGAGFGRHAQTSICTCRRRGHVLPVHNLH 171
I+PD +S + +Y +G S C+ G+ G R Q S+CT R R H L VH
Sbjct: 320 ISPDGKLSFIVTSRYFDGSAGVSSCYHLAFGSNGGCTRE-QVSVCTWRVRLHELRVHRSD 378
Query: 170 ILNC-WRC 150
+N W C
Sbjct: 379 AMNLRWFC 386
>06_01_0008 + 141405-142421
Length = 338
Score = 31.5 bits (68), Expect = 0.61
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Frame = +1
Query: 241 PNPAPAPDSVAKQGDPL-YLHPH-TVLITKSGVIQLIMK 351
P+P+P+P A+ DP +LH H T L++ IQ++++
Sbjct: 89 PSPSPSPSPAARHFDPSNFLHDHFTGLLSGGATIQIVLE 127
>02_01_0599 -
4455151-4455915,4455999-4456098,4456176-4456222,
4456566-4456612,4457299-4457461,4458013-4458042
Length = 383
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/34 (32%), Positives = 23/34 (67%)
Frame = +2
Query: 425 SKYAPAVEMDTNDVIAKIDDLTQKLTVATQIWRK 526
+++AP+VE +V A I+ +T+K+ + + W+K
Sbjct: 303 NRHAPSVEHSLAEVAAHIEAVTEKIIMEEEKWKK 336
>11_03_0026 -
9057965-9058234,9059410-9059522,9059612-9059802,
9060606-9060720,9061781-9061907,9062915-9062990,
9064247-9064365,9065430-9065593,9065666-9065779,
9065966-9066065,9066276-9066340,9068175-9068253,
9069513-9069659,9069904-9070161,9070657-9070852,
9071179-9071402,9072531-9072554
Length = 793
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -2
Query: 333 HARFGNEHCVWVQIQRVALLCHA 265
H FG++H + VQ+Q A++CHA
Sbjct: 203 HIVFGSQHNLPVQLQAKAVICHA 225
>09_06_0072 - 20682424-20682870,20683928-20684854
Length = 457
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +1
Query: 244 NPAPAPDSVAKQGDPLYLHPHTVLITKSGVIQL-IMKSKLPYAIELQEW 387
NPAPAP P L +L+ K+ V Q+ + S L + I L +W
Sbjct: 125 NPAPAPAPTPTPPPPGILESLAMLVIKAVVFQVSALISCLTFPIRLLQW 173
>07_01_0245 - 1803170-1803887,1803971-1804641
Length = 462
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -3
Query: 257 AGAGFGRHAQTSICTCRRRGHVLP 186
AGAG G H TS C C+ R + LP
Sbjct: 25 AGAGAGVHPSTSPCYCKIRLNKLP 48
>04_01_0083 +
904473-905167,905247-905347,905902-905994,907322-907968
Length = 511
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +2
Query: 224 TFEHADQIQHLLQIAWQSRATRCICTHTQCSL 319
+ EH I+H ++I WQ R +C C L
Sbjct: 255 SLEHHQAIRHAVKIGWQKYIKRYLCLAIFCML 286
>01_03_0010 -
11608537-11608786,11608816-11608940,11609152-11609217,
11609741-11609872,11610507-11610608,11610743-11610940,
11611015-11611161,11611321-11611431,11613241-11613780,
11613847-11614003,11614148-11614297,11614375-11614514,
11615346-11615468,11615561-11615677,11617184-11617357,
11617768-11617909,11618076-11618194,11619773-11619955
Length = 991
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/50 (24%), Positives = 24/50 (48%)
Frame = +2
Query: 149 DIASSLKYVNCERAIRVHVDGKYKSTFEHADQIQHLLQIAWQSRATRCIC 298
D++S + + + + H+D ++ T E DQ+ ++L I C C
Sbjct: 565 DVSSVIGHYDTSKQNVHHMDNEWWETQERGDQVDYVLDIGEVGPRATCCC 614
>09_04_0160 + 15226762-15227032,15227138-15227373,15227469-15227565,
15227657-15227783,15227870-15228482,15228572-15228835,
15228918-15229130,15229253-15229460,15229552-15229748,
15229830-15230183,15230287-15230874
Length = 1055
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = -3
Query: 563 IISLANKMSDRFASAKSAWPPSIFASDRQFWQ*HHLYPF 447
II + +SD + AW P FW HLYPF
Sbjct: 965 IIGVVAGVSDAINNGSEAWGPLFGKLFFAFWVIVHLYPF 1003
>06_02_0101 -
11816507-11816878,11817571-11817840,11818014-11818076,
11818610-11819002
Length = 365
Score = 27.9 bits (59), Expect = 7.6
Identities = 20/49 (40%), Positives = 27/49 (55%)
Frame = +1
Query: 244 NPAPAPDSVAKQGDPLYLHPHTVLITKSGVIQLIMKSKLPYAIELQEWL 390
+PAPA +A G P+T+L+ SGVI +I S P ELQ +L
Sbjct: 20 SPAPAKIVIADLG--CSSGPNTLLVV-SGVISMISTSGYPEKTELQFFL 65
>03_04_0104 +
17315751-17315940,17316255-17316343,17316892-17317007,
17317214-17317421
Length = 200
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +1
Query: 493 KIDGGHADLAEANRSLILFANEMIVARRDAETARQDCXNARRETAQW 633
+IDG + D+AEA SL++ + + RD +T RR+ W
Sbjct: 22 EIDGDNEDVAEATTSLVII---LAMTERDQKTGPGVAEGDRRDWRGW 65
>01_06_1510 - 37859664-37861319
Length = 551
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 297 APTHSAHYQIWRDSTDNEVQIALRHRITRMA 389
AP H H+Q++R S +ALRHR R A
Sbjct: 24 APAHG-HHQVFRCSAAKPSPLALRHRAGRPA 53
>01_06_0996 +
33667663-33667900,33668019-33668091,33668785-33668841,
33668970-33669067,33669482-33669637,33669744-33670366,
33670484-33670560,33671551-33671805,33671950-33672067,
33672174-33672345,33672434-33672975
Length = 802
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = -2
Query: 291 QRVALLCHAIWSRCWIWSACSNVDLYLP-STWT 196
+RV + W R W+ CS VDL P + WT
Sbjct: 31 ERVGYGMPSFWPRSTKWALCSEVDLIGPLNNWT 63
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,282,986
Number of Sequences: 37544
Number of extensions: 432096
Number of successful extensions: 1219
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1218
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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