Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060744.seq
         (661 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6484| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.83 
SB_32738| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-13)                 29   2.5  
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.4  
SB_37158| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  

>SB_6484| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 741

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +1

Query: 481 RSDAKIDGGHADLAEANRSLILFANEMIVARRDAETARQDCXNARR 618
           R D K+D   A L EA + L     + I  R+D ++  +DC N  R
Sbjct: 2   RDDEKVDPAEA-LLEAQQELATLQRQYICLRKDKKSYTEDCENVIR 46


>SB_32738| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-13)
          Length = 323

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -2

Query: 300 VQIQRVALLCHAIWSRCWIWSACS--NVDLYLPST 202
           V +QRV ++C  +W  C I+SA +   V +Y P T
Sbjct: 157 VTVQRVLIICGGMWVSCSIFSAVTLYGVHVYHPVT 191


>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 592

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
 Frame = -3

Query: 299 CKYSGSPCFATLSGAG-----AGFGRHAQTSICTCRRRGHVLPVHNLHILNCWRCPW 144
           CK +   C     G G     A   R A+  +CT  R   +L  +N  + NC RC +
Sbjct: 168 CKPNNLRCVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLTANNGRVTNCQRCTY 224


>SB_37158| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1421

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/41 (24%), Positives = 23/41 (56%)
 Frame = +1

Query: 238 RPNPAPAPDSVAKQGDPLYLHPHTVLITKSGVIQLIMKSKL 360
           RP+  P    ++ +    +LH  ++L+TK G ++++   K+
Sbjct: 125 RPSSLPCGRCLSDRDASKFLHTTSILLTKKGSLKIVFNEKI 165


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,755,260
Number of Sequences: 59808
Number of extensions: 476016
Number of successful extensions: 1157
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1155
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)