Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060744.seq
         (661 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z22181-4|CAA80182.1|  824|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z98877-16|CAH60800.1|  975|Caenorhabditis elegans Hypothetical p...    29   3.9  
U00048-3|AAB53827.3|  315|Caenorhabditis elegans Nematode astaci...    28   6.8  
Z68120-1|CAA92199.3|  711|Caenorhabditis elegans Hypothetical pr...    27   8.9  
U97592-4|AAB52872.1|  450|Caenorhabditis elegans Hypothetical pr...    27   8.9  
AF218866-1|AAF67103.1|  711|Caenorhabditis elegans transmembrane...    27   8.9  

>Z22181-4|CAA80182.1|  824|Caenorhabditis elegans Hypothetical
           protein ZK632.5 protein.
          Length = 824

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
 Frame = +2

Query: 134 RFVAKDIASSLKYVNCERAIRVHVDGKYKSTFEHADQIQ-HLLQIAWQ---SRATRCICT 301
           R   +D  +SLK V+  + + V +DG+YK        ++ ++ Q+AW    +  TR +  
Sbjct: 93  RLSDEDFENSLKEVSLSQKLMVRIDGEYKYRLYSKPIVRNNIPQLAWDISPALRTRKVAE 152

Query: 302 HTQCSLPN 325
             + S PN
Sbjct: 153 KDEISPPN 160


>Z98877-16|CAH60800.1|  975|Caenorhabditis elegans Hypothetical
           protein Y69H2.10b protein.
          Length = 975

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
 Frame = -3

Query: 290 SGSPCFATLSGAGAGFGRHAQTSIC---TCRRRGHVLPVHNLHILN 162
           +G P F  ++G GAG   H    IC    CR     LP  N H +N
Sbjct: 607 NGKPSFCEVAGCGAGEICHETIEICGEPPCRSMATCLPTTN-HTVN 651


>U00048-3|AAB53827.3|  315|Caenorhabditis elegans Nematode astacin
           protease protein 4 protein.
          Length = 315

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = -2

Query: 294 IQRVALLCHAIWSRCWIWSACSN---VDLYLPSTWTRIARSQF 175
           IQR +L+  AI++ CW  S  +N   +D  +P T T +  + F
Sbjct: 4   IQRYSLVFCAIFATCWTASVVNNKQVIDTSVPQTETTLNDADF 46


>Z68120-1|CAA92199.3|  711|Caenorhabditis elegans Hypothetical
           protein T24C2.1 protein.
          Length = 711

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
 Frame = -2

Query: 660 LRNVRHAVGPLRRFAARVXAILPSRFSVASSHNHFVGKQNERSVCFRQICVATVNFCVRS 481
           +RNV H+V  ++++   V      RF   + ++  +  + + S C+    +++   C  S
Sbjct: 572 IRNVTHSVPTVKKYDKFVNNNADWRFDDKAINDSDIVSEKQTSACYNATIISSQRQCKWS 631

Query: 480 SI---LAITSFVSI 448
            +   L I SF S+
Sbjct: 632 GVEHLLLIWSFASL 645


>U97592-4|AAB52872.1|  450|Caenorhabditis elegans Hypothetical
           protein C14A11.5 protein.
          Length = 450

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 170 YVNCERAIRVHVDGKYKSTFEHADQIQHLLQ-IAWQSRA 283
           Y NC+ +IR  V+ KY   F   D+I+ L + + W S +
Sbjct: 322 YGNCKESIRSRVEEKYNQLF--IDRIRELTEKLEWSSES 358


>AF218866-1|AAF67103.1|  711|Caenorhabditis elegans transmembrane
           protein RAM-5 protein.
          Length = 711

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
 Frame = -2

Query: 660 LRNVRHAVGPLRRFAARVXAILPSRFSVASSHNHFVGKQNERSVCFRQICVATVNFCVRS 481
           +RNV H+V  ++++   V      RF   + ++  +  + + S C+    +++   C  S
Sbjct: 572 IRNVTHSVPTVKKYDKFVNNNADWRFDDKAINDSDIVSEKQTSACYNATIISSQRQCKWS 631

Query: 480 SI---LAITSFVSI 448
            +   L I SF S+
Sbjct: 632 GVEHLLLIWSFASL 645


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,719,733
Number of Sequences: 27780
Number of extensions: 348244
Number of successful extensions: 883
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)