Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060743.seq
         (495 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein L22|Schizosa...    47   2e-06
SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr 1|||M...    28   0.89 
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    26   2.7  
SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   3.6  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   3.6  
SPBC409.04c |mis12||kinetochore protein Mis12|Schizosaccharomyce...    25   4.7  
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    25   4.7  
SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual           25   8.3  

>SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein
           L22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 46.8 bits (106), Expect = 2e-06
 Identities = 23/47 (48%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
 Frame = +3

Query: 141 KFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNL--SITLSSPG 275
           K+ ID T    D I DV  FEKYL + +KV+GKT NL  S+ +S  G
Sbjct: 11  KYIIDATAAVNDKIFDVAAFEKYLIDRIKVDGKTGNLGSSVVVSREG 57



 Score = 38.7 bits (86), Expect = 5e-04
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +2

Query: 260 VVVARD-KTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHDAYELRYF 424
           VVV+R+  +K+A+ A I FS                  DWLRVV++    YELRY+
Sbjct: 51  VVVSREGSSKIAVIAHIDFSGRYLKYLTKKFLKKHSLRDWLRVVSTKKGVYELRYY 106


>SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 27.9 bits (59), Expect = 0.89
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 125 LDAFAADFATLHSFFASLLMQLGFFS 48
           +D +  DFAT H+ + + L  +GF S
Sbjct: 87  IDLYILDFATQHNLYVASLRNMGFLS 112


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +3

Query: 186  DVGNFEKYLKEHVKVEGKTNNLSITLSSPG 275
            + GN +KY + ++KV GK N+  +T  +PG
Sbjct: 955  EAGNLKKYDQPNLKVSGK-NDSFVTHHTPG 983


>SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 350

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
 Frame = +3

Query: 183 LDVGNFEKYLKEHVKVEGKTNNLSITLSS-------PGIRRKSLSPQTFLFQR 320
           LD  +F K   +H++V+   +  S + S        P +RRKSL P+  +FQR
Sbjct: 111 LDQRSFSKTPNKHIEVKNLKDLCSPSHSGRISKSLCPVLRRKSLLPKPKMFQR 163


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +3

Query: 141 KFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNL 251
           K   DC +  + ++  + N +K + +HV  E K + L
Sbjct: 819 KLKTDCENLTQQNMTLIDNVQKLMHKHVNQESKVSEL 855


>SPBC409.04c |mis12||kinetochore protein Mis12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 256 SRCRRQG*DESRYHRRHSFFKEVPEVFNKTLPQEEQF 366
           SR R +  +  ++  R SF  +VPE +  TLP+   F
Sbjct: 135 SRKREKKTEIEKHLERISFLNKVPENWQVTLPETTDF 171


>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -1

Query: 336 KYFRYLFEKGMSAVIATFVLSL 271
           K+FRY+F   ++ ++  FVL++
Sbjct: 198 KWFRYIFRVSVAVILLDFVLNM 219


>SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +3

Query: 147 TIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSITLS 266
           ++  T PAE +         Y  EH +++ + N LS  LS
Sbjct: 143 SLKITQPAEKNSGTANPISAYSLEHAELDERNNQLSEALS 182


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,662,138
Number of Sequences: 5004
Number of extensions: 27864
Number of successful extensions: 80
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)