Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060743.seq
         (495 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0963 - 12769715-12769859,12770639-12770889                       50   1e-06
07_03_1662 + 28447419-28447666,28448429-28448573                       45   3e-05
06_01_0971 + 7498971-7499477,7499578-7499715,7500653-7500732,750...    27   6.3  

>03_02_0963 - 12769715-12769859,12770639-12770889
          Length = 131

 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 27/57 (47%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = +2

Query: 260 VVVARDKTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHD--AYELRYF 424
           V V+RDKTKV +T+D PFS                  DWLRV+AS  D   YELRYF
Sbjct: 64  VTVSRDKTKVTVTSDGPFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYF 120



 Score = 44.4 bits (100), Expect = 5e-05
 Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 3/47 (6%)
 Frame = +3

Query: 135 NLKFTIDCTHPAEDSILDVGNFEKYLKEHVKVE-GKTNNL--SITLS 266
           ++ F IDC  P +D I+++ + EK+L+E +KV  GK  NL  S+T+S
Sbjct: 21  SVTFVIDCAKPVDDKIMEIASLEKFLQERIKVAGGKAGNLGESVTVS 67


>07_03_1662 + 28447419-28447666,28448429-28448573
          Length = 130

 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 20/47 (42%), Positives = 33/47 (70%), Gaps = 3/47 (6%)
 Frame = +3

Query: 135 NLKFTIDCTHPAEDSILDVGNFEKYLKEHVKVE-GKTNNL--SITLS 266
           ++ F IDC+ P ED I+++ + EK+L+E +KV  GK  NL  S+T++
Sbjct: 20  SVSFVIDCSKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSVTVT 66



 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 25/57 (43%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +2

Query: 260 VVVARDKTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHD--AYELRYF 424
           V V RDKTKV +T+D  FS                  DWLRV+A+  D   YELRYF
Sbjct: 63  VTVTRDKTKVTVTSDGAFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYF 119


>06_01_0971 +
           7498971-7499477,7499578-7499715,7500653-7500732,
           7501175-7501584,7503650-7503834,7504280-7504365,
           7504641-7504774,7506491-7506790,7506999-7507147,
           7507762-7507845
          Length = 690

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 16/38 (42%), Positives = 18/38 (47%)
 Frame = -3

Query: 256 MLRLFVLPSTLTCSFKYFSKLPTSKILSSAGCVQSIVN 143
           M RL  LP   TC  KY  KL  +    S GC+ S  N
Sbjct: 204 MRRLMWLP---TCERKYMVKLELALFYLSQGCIDSAYN 238


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,881,798
Number of Sequences: 37544
Number of extensions: 185290
Number of successful extensions: 455
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)