Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060743.seq
         (495 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33983| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.018
SB_2161| Best HMM Match : Ribosomal_L22e (HMM E-Value=1.1e-05)         36   0.018
SB_19339| Best HMM Match : Transposase_21 (HMM E-Value=5.6e-05)        29   1.6  
SB_58789| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.7  

>SB_33983| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 50

 Score = 35.9 bits (79), Expect = 0.018
 Identities = 14/18 (77%), Positives = 16/18 (88%)
 Frame = +2

Query: 371 DWLRVVASAHDAYELRYF 424
           DWLRVVA+ H +YELRYF
Sbjct: 18  DWLRVVAADHTSYELRYF 35


>SB_2161| Best HMM Match : Ribosomal_L22e (HMM E-Value=1.1e-05)
          Length = 50

 Score = 35.9 bits (79), Expect = 0.018
 Identities = 14/18 (77%), Positives = 16/18 (88%)
 Frame = +2

Query: 371 DWLRVVASAHDAYELRYF 424
           DWLRVVA+ H +YELRYF
Sbjct: 18  DWLRVVAADHTSYELRYF 35


>SB_19339| Best HMM Match : Transposase_21 (HMM E-Value=5.6e-05)
          Length = 290

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = +3

Query: 153 DCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSITLSSPGI 278
           +C    ED I+D  N++ + KEHV +    NN +I L++ G+
Sbjct: 84  NCPENIED-IIDGENYQLFFKEHVFLR-NPNNFAIQLNTDGV 123


>SB_58789| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 987

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -1

Query: 342 FVKYFRYLFEKGMSAVIATFVLSLATTT*CLGYLFCPQL 226
           F+  +RY+   G+S ++     + AT   C+G LF P+L
Sbjct: 755 FIPTYRYVV--GISRILVVVFTAFATAFSCMGCLFIPKL 791


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,666,795
Number of Sequences: 59808
Number of extensions: 218679
Number of successful extensions: 481
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1062812967
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)