Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060743.seq
         (495 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58760-2|AAK31460.1|  130|Caenorhabditis elegans Ribosomal prote...    46   1e-05
U58760-3|AAL02443.1|   53|Caenorhabditis elegans Ribosomal prote...    27   7.5  
AF045641-5|AAC02577.2|  554|Caenorhabditis elegans Hypothetical ...    27   7.5  
AC084197-3|AAN63427.1|  173|Caenorhabditis elegans Histone h1 li...    24   9.3  

>U58760-2|AAK31460.1|  130|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 22, isoform a protein.
          Length = 130

 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 18/40 (45%), Positives = 28/40 (70%)
 Frame = +3

Query: 135 NLKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLS 254
           +LKF ++C +P ED IL + + E +L E +KV GKT +L+
Sbjct: 20  HLKFNVECKNPVEDGILRIEDLEAFLNEKIKVNGKTGHLA 59



 Score = 40.7 bits (91), Expect = 6e-04
 Identities = 20/57 (35%), Positives = 30/57 (52%)
 Frame = +2

Query: 254 HHVVVARDKTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHDAYELRYF 424
           ++V V   K+KV++ +++PFS                  DWLRVVA   + YE+RYF
Sbjct: 61  NNVKVEVAKSKVSVVSEVPFSKRYLKYLTKKYLKRNSLRDWLRVVAVNKNTYEVRYF 117


>U58760-3|AAL02443.1|   53|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 22, isoform b protein.
          Length = 53

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 135 NLKFTIDCTHPAEDSILDV 191
           +LKF ++C +P ED IL +
Sbjct: 20  HLKFNVECKNPVEDGILRI 38


>AF045641-5|AAC02577.2|  554|Caenorhabditis elegans Hypothetical
           protein F53H1.3 protein.
          Length = 554

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = -2

Query: 275 PWRRQRDA*VICFALNFDVFLQVFLEVTYV*DTILSGMRAVD 150
           PW R RD       + FD+ L   LEV Y  D ILS    ++
Sbjct: 7   PWDRFRDWLHCICVVTFDLELGQALEVIYPGDAILSNTEKIN 48


>AC084197-3|AAN63427.1|  173|Caenorhabditis elegans Histone h1 like
           protein 2, isoformb protein.
          Length = 173

 Score = 23.8 bits (49), Expect(2) = 9.3
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +3

Query: 12  SFATMAVTKKPVAKK 56
           +  T A TKKPVAKK
Sbjct: 93  NMVTAAATKKPVAKK 107



 Score = 21.4 bits (43), Expect(2) = 9.3
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = +3

Query: 30  VTKKPVAKKA 59
           V KKPVAKKA
Sbjct: 104 VAKKPVAKKA 113


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,345,016
Number of Sequences: 27780
Number of extensions: 161603
Number of successful extensions: 390
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)