Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060743.seq
         (495 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g27770.1 68418.m03330 60S ribosomal protein L22 (RPL22C) ribo...    47   6e-06
At3g05560.2 68416.m00614 60S ribosomal protein L22-2 (RPL22B) id...    47   8e-06
At3g05560.1 68416.m00613 60S ribosomal protein L22-2 (RPL22B) id...    47   8e-06
At1g02830.1 68414.m00243 60S ribosomal protein L22 (RPL22A) simi...    47   8e-06
At3g60970.1 68416.m06823 ABC transporter family protein ABC tran...    27   5.3  
At1g04120.1 68414.m00401 ABC transporter family protein Strong s...    27   5.3  
At5g20970.1 68418.m02493 heat shock family protein contains simi...    27   9.2  
At5g12150.1 68418.m01426 pleckstrin homology (PH) domain-contain...    27   9.2  
At3g52140.1 68416.m05723 tetratricopeptide repeat (TPR)-containi...    27   9.2  

>At5g27770.1 68418.m03330 60S ribosomal protein L22 (RPL22C)
           ribosomal protein L22 (cytosolic), Rattus norvegicus,
           PIR:S52084
          Length = 124

 Score = 47.2 bits (107), Expect = 6e-06
 Identities = 18/43 (41%), Positives = 30/43 (69%)
 Frame = +3

Query: 138 LKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSITLS 266
           + FTIDC+ P +D I+++ + EK+L+E +KV GK   L  ++S
Sbjct: 16  VSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVS 58



 Score = 41.1 bits (92), Expect = 4e-04
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +2

Query: 260 VVVARDKTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHD--AYELRYF 424
           V + R+K+K+ +TAD  FS                  DWLRV+A+  D   YELRYF
Sbjct: 57  VSITREKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYF 113


>At3g05560.2 68416.m00614 60S ribosomal protein L22-2 (RPL22B)
           identical to 60S ribosomal protein L22-2 SP:Q9M9W1 from
           [Arabidopsis thaliana]
          Length = 124

 Score = 46.8 bits (106), Expect = 8e-06
 Identities = 19/45 (42%), Positives = 32/45 (71%), Gaps = 2/45 (4%)
 Frame = +3

Query: 138 LKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNL--SITLS 266
           + FTIDC+ P +D I+++ + EK+L+E +KV GK   L  S+T++
Sbjct: 16  VSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVTIT 60



 Score = 41.9 bits (94), Expect = 2e-04
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +2

Query: 260 VVVARDKTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHD--AYELRYF 424
           V + R+K+K+ +TAD  FS                  DWLRV+A+  D   YELRYF
Sbjct: 57  VTITREKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYF 113


>At3g05560.1 68416.m00613 60S ribosomal protein L22-2 (RPL22B)
           identical to 60S ribosomal protein L22-2 SP:Q9M9W1 from
           [Arabidopsis thaliana]
          Length = 124

 Score = 46.8 bits (106), Expect = 8e-06
 Identities = 19/45 (42%), Positives = 32/45 (71%), Gaps = 2/45 (4%)
 Frame = +3

Query: 138 LKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNL--SITLS 266
           + FTIDC+ P +D I+++ + EK+L+E +KV GK   L  S+T++
Sbjct: 16  VSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVTIT 60



 Score = 41.9 bits (94), Expect = 2e-04
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +2

Query: 260 VVVARDKTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHD--AYELRYF 424
           V + R+K+K+ +TAD  FS                  DWLRV+A+  D   YELRYF
Sbjct: 57  VTITREKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYF 113


>At1g02830.1 68414.m00243 60S ribosomal protein L22 (RPL22A) similar
           to ribosomal protein L22 GI:710294 from [Rattus
           norvegicus]
          Length = 127

 Score = 46.8 bits (106), Expect = 8e-06
 Identities = 18/43 (41%), Positives = 29/43 (67%)
 Frame = +3

Query: 138 LKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSITLS 266
           + F IDC+ P +D+IL++   EK+L+E +KV GK   L  ++S
Sbjct: 18  VSFVIDCSKPVDDTILEIATLEKFLQERIKVRGKAGALGNSVS 60



 Score = 31.9 bits (69), Expect = 0.24
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = +2

Query: 260 VVVARDKTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHD--AYELRYF 424
           V + R   K+ + A+  FS                  DWLRV+AS  D   YE+RYF
Sbjct: 59  VSITRYNGKINVNANSNFSKRYLKYLTKKYLKKYNLRDWLRVIASNKDKNVYEVRYF 115


>At3g60970.1 68416.m06823 ABC transporter family protein ABC
           transporter-like proteins
          Length = 1037

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -3

Query: 241 VLPSTLTCSFKYFSKLPTSKILSSAGCVQSIVNFKLIFRL 122
           +L S       YF   PT +IL+ A   QS+++ ++  +L
Sbjct: 560 MLCSIFRAPMSYFDSTPTGRILNRASTDQSVLDLEMAVKL 599


>At1g04120.1 68414.m00401 ABC transporter family protein Strong
            similarity to MRP-like ABC transporter gb|U92650 from A.
            thaliana and canalicular multi-drug resistance protein
            gb|L49379 from Rattus norvegicus
          Length = 1514

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -3

Query: 253  LRLFVLPSTLTCSFKYFSKLPTSKILSSAGCVQSIVNFKLIFRL 122
            L L +L S       +F   P  +IL+     QS+V+  + FRL
Sbjct: 1022 LFLNMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRL 1065


>At5g20970.1 68418.m02493 heat shock family protein contains
           similarity to Swiss-Prot:P27397 18.0 kDa class I heat
           shock protein [Daucus carota]
          Length = 249

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 8   RFVCHNGSNKETGG*KSPIASEDWQKRSEG 97
           R V  +G NK TG  K P++S+D +K   G
Sbjct: 164 REVVQSGKNKLTGEPKGPLSSKDDEKDKVG 193


>At5g12150.1 68418.m01426 pleckstrin homology (PH) domain-containing
           protein / RhoGAP domain-containing protein weak
           similarity to glucocorticoid receptor DNA binding factor
           1 [Canis familiaris] GI:23266717; contains Pfam profiles
           PF00169: PH domain, PF00620: RhoGAP domain
          Length = 827

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -3

Query: 442 AVSVDVEVAQFVSVMS-GGHHSKPVTQIVLLEVT 344
           A S+ + + ++  VM  G HH  P T   L+E+T
Sbjct: 754 AASLGIPMEEYSPVMDYGRHHHPPATSAALMELT 787


>At3g52140.1 68416.m05723 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515: TPR Domain
          Length = 1403

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -3

Query: 298 GDSDFRLIPGDDNVMLRLFVLPSTLTCSFKYFSKLPTSK 182
           G  + +L PGD  + +R F+L +  TC F  +  L  +K
Sbjct: 118 GKMELQLNPGDSVMDIRQFLLDAPETCYFTCYELLLRNK 156


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,734,969
Number of Sequences: 28952
Number of extensions: 149219
Number of successful extensions: 378
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 868578304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)