Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060742.seq
         (677 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   3.0  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    22   4.0  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    21   9.3  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    21   9.3  
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    21   9.3  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    21   9.3  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = -1

Query: 530 VRESFQ*LSSSLNECWDAGSSNGCRQGRSPLSEVDATMPTPP 405
           ++E+F      +N   + G   G ++  S LS  +   P PP
Sbjct: 694 IKENFHTALEIMNRAVNIGQQPGAKESISYLSMENNAPPPPP 735


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 544 YNQGKFGNLFNNCPLA*TSAGT 479
           ++    GN + N PL  TSAGT
Sbjct: 407 HSHSTIGNDYYNSPLYHTSAGT 428


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -1

Query: 581 PVWSC*SPGLC 549
           PVW   +PG+C
Sbjct: 619 PVWCAQNPGMC 629


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +3

Query: 156 PVRVQGAHTSGPGQ*CSRFYVQELEAAL 239
           PVR+ G H  G    C++      E AL
Sbjct: 196 PVRIMGVHRPGFDNDCNKNTSTSKEIAL 223


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +3

Query: 84  IGSPTFSVGVFRKERDGAGCSQAPPVRVQGAHTSGP 191
           +G P +  G   K  + +  S  PP+ + GA  +GP
Sbjct: 287 LGIPAY--GRAWKMDEDSSISGVPPLSIDGALEAGP 320


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 7/15 (46%), Positives = 7/15 (46%)
 Frame = +2

Query: 287 YRTCCRPNSACPWWW 331
           YR C RP      WW
Sbjct: 256 YRYCYRPYPVYNQWW 270


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,477
Number of Sequences: 336
Number of extensions: 3295
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17697850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)