Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060742.seq
(677 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 123 1e-28
07_01_0578 + 4295386-4296489,4297394-4297507 121 6e-28
10_02_0199 + 6668902-6669293,6669825-6669882 35 0.052
12_01_0073 + 613316-613447,613611-613802,614067-614232,614460-61... 34 0.12
07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988 33 0.21
11_01_0072 + 570345-570476,570640-570831,571095-571260,571487-57... 31 0.64
02_01_0748 + 5566073-5567620 31 1.1
11_01_0748 + 6299776-6300042 30 2.0
08_02_0459 + 17420156-17420976,17422291-17424199 30 2.0
01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149 29 2.6
08_02_0105 + 12448808-12449152,12449218-12449409,12449520-124496... 29 3.4
07_01_0524 + 3892340-3894625,3894995-3895109,3895204-3895298,389... 29 3.4
02_04_0457 + 23093020-23093343,23093798-23093806 29 4.5
03_06_0646 + 35260497-35262371,35262500-35262683,35262906-352630... 28 6.0
01_05_0564 + 23312419-23312987,23314652-23314751,23314832-233150... 28 6.0
10_01_0359 + 3956527-3956616,3957623-3957818,3958102-3959418,395... 28 7.9
08_02_1285 - 25881091-25881798 28 7.9
06_03_0243 + 18629793-18630047,18630362-18630442,18631911-186323... 28 7.9
05_05_0015 + 21530547-21531047 28 7.9
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 123 bits (297), Expect = 1e-28
Identities = 57/94 (60%), Positives = 61/94 (64%)
Frame = +3
Query: 255 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXX 434
AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWH
Sbjct: 61 AGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRRVNI 120
Query: 435 XXXXXXXXXXXXXXXXXXXXQARGQLLKRFPNFP 536
ARG ++ P FP
Sbjct: 121 RLRRIAVASALAATAVPSLVLARGHRIEGVPEFP 154
Score = 60.1 bits (139), Expect = 2e-09
Identities = 27/55 (49%), Positives = 39/55 (70%)
Frame = +2
Query: 512 IEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRN 676
IE +PE PLVV+D ++ I KT Q++ L+++ A++D K S +RAGKGKMRN
Sbjct: 147 IEGVPEFPLVVSDSIESIEKTAQSIKVLKQIGAYADAEKTKDSVAIRAGKGKMRN 201
Score = 50.4 bits (115), Expect = 1e-06
Identities = 27/57 (47%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Frame = +1
Query: 85 SVARPLVSVYS-EKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSK 252
+ ARPLVSV + E A +P V +APIRPD+V H +S N RQPY VS+
Sbjct: 3 AAARPLVSVKALEGDMATDSAGIQMPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSR 59
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 121 bits (291), Expect = 6e-28
Identities = 55/94 (58%), Positives = 60/94 (63%)
Frame = +3
Query: 255 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXX 434
AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WR+WH
Sbjct: 62 AGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRKWHRRVNV 121
Query: 435 XXXXXXXXXXXXXXXXXXXXQARGQLLKRFPNFP 536
ARG ++ P P
Sbjct: 122 HLRRVAVASALAATSVPSLVLARGHRIETVPELP 155
Score = 59.7 bits (138), Expect = 2e-09
Identities = 27/55 (49%), Positives = 38/55 (69%)
Frame = +2
Query: 512 IEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRN 676
IE +PELPLV++D + I KT QA+ L+++ A++D K S +R GKGKMRN
Sbjct: 148 IETVPELPLVISDSAESIEKTSQAIKILKQVGAYADAEKAKDSVGIRPGKGKMRN 202
Score = 48.4 bits (110), Expect = 5e-06
Identities = 26/55 (47%), Positives = 36/55 (65%), Gaps = 2/55 (3%)
Frame = +1
Query: 94 RPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSK 252
RPLVSV + + + T ++ L VF+AP+RPD+V VH +S N RQPY VS+
Sbjct: 6 RPLVSVKALEGDMATDNSSSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSR 60
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 35.1 bits (77), Expect = 0.052
Identities = 21/47 (44%), Positives = 23/47 (48%)
Frame = +3
Query: 243 REQGAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 383
RE G G A+SW TGRA A + R R GG R A N G R
Sbjct: 30 REGGGG----AQSWATGRAAAELGRGRKGGRRRGLAQAAANSGEGNR 72
>12_01_0073 +
613316-613447,613611-613802,614067-614232,614460-614845
Length = 291
Score = 33.9 bits (74), Expect = 0.12
Identities = 19/52 (36%), Positives = 24/52 (46%)
Frame = +3
Query: 57 ASLK*RNESIGSPTFSVGVFRKERDGAGCSQAPPVRVQGAHTSGPGQ*CSRF 212
ASL N I +PTF +G K G S + + GAHT G + C F
Sbjct: 126 ASLDTANNDIPAPTFDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176
>07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988
Length = 292
Score = 33.1 bits (72), Expect = 0.21
Identities = 20/52 (38%), Positives = 23/52 (44%)
Frame = +3
Query: 57 ASLK*RNESIGSPTFSVGVFRKERDGAGCSQAPPVRVQGAHTSGPGQ*CSRF 212
ASL N + P+F V G SQA V + GAHT G Q C F
Sbjct: 125 ASLALANSDLPPPSFDVANLTASFAAKGLSQADMVALSGAHTVGQAQ-CQNF 175
>11_01_0072 +
570345-570476,570640-570831,571095-571260,571487-571872
Length = 291
Score = 31.5 bits (68), Expect = 0.64
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = +3
Query: 57 ASLK*RNESIGSPTFSVGVFRKERDGAGCSQAPPVRVQGAHTSGPGQ*CSRF 212
ASL N I +PT +G K G S + + GAHT G + C F
Sbjct: 126 ASLDTANNDIPAPTLDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176
>02_01_0748 + 5566073-5567620
Length = 515
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +2
Query: 392 PHEALAALASSRQPPTAESGLGGSRCCYRRPSTRSG*RTIIEKIPELPLVVADKV 556
PH L ++ SR P L S C P+T+SG + PELP+++ V
Sbjct: 439 PHVTLQSVTMSRSPERGIVSLQDS-CLVTPPATQSGDHCRRRRSPELPVLLCKSV 492
>11_01_0748 + 6299776-6300042
Length = 88
Score = 29.9 bits (64), Expect = 2.0
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +3
Query: 225 LEAALL--REQGAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG 380
LEA L+ R G G + E+ G GRAVA + R H +G GA GG
Sbjct: 16 LEAVLVDRRMAGGGDDGAVETGGGGRAVAALARCWRRRWHGAGGGAGAVEAGGG 69
>08_02_0459 + 17420156-17420976,17422291-17424199
Length = 909
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = -3
Query: 261 DQLLAHAVGLPRVLGHRNVNIIDQVRTYGRLEHEREGLGCTLHR 130
DQ+L GLP + + + +++RT + EH + +GC L R
Sbjct: 360 DQILKKCDGLPLAIIAISGLLANKLRTKDQWEHVKNSIGCALER 403
>01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149
Length = 248
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -3
Query: 342 TYEYHH-HGHAEFGRQHVRYPMIRHWFGDQLLAHAVGLPRVLGH 214
T+++HH HGH FGR H +P H G ++ + G P H
Sbjct: 144 THDHHHGHGHHLFGRDH--WPASHHPAGG-MVNYGGGAPYYAAH 184
>08_02_0105 +
12448808-12449152,12449218-12449409,12449520-12449685,
12449771-12450201
Length = 377
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +3
Query: 57 ASLK*RNESIGSPTFSVGVFRKERDGAGCSQAPPVRVQGAHTSGPGQ*CSRF 212
ASL+ N ++ +PT V ++ G S V + GAHT G + C+ F
Sbjct: 197 ASLQGANTNLPAPTSGVATLVQKFRNVGLSAKDMVALSGAHTIGKAR-CTTF 247
>07_01_0524 +
3892340-3894625,3894995-3895109,3895204-3895298,
3895929-3896167,3896524-3896610,3896967-3897066,
3897908-3898115,3898224-3899422
Length = 1442
Score = 29.1 bits (62), Expect = 3.4
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Frame = +3
Query: 219 QELEAALLREQGAGHQTSAESWGTGRAVAR--IPRVRGGGTHRSGQGAFGNMCR---GGR 383
+++ A ++G G S S G++V + + R+R H G G+ G++ + GG+
Sbjct: 64 EKVSGAKSTDEGGGSDKSKGS-EVGKSVLQPDVKRIRTEAAHGGGSGSGGSVSKDGTGGK 122
Query: 384 MFAPTKP-WR 410
M P P WR
Sbjct: 123 MLRPGFPKWR 132
>02_04_0457 + 23093020-23093343,23093798-23093806
Length = 110
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +3
Query: 258 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFG 362
G + S W G A A VRGGG RSG G G
Sbjct: 76 GRRRSQPRWRGGAAAAEAD-VRGGGARRSGGGDEG 109
>03_06_0646 +
35260497-35262371,35262500-35262683,35262906-35263007,
35263101-35263231,35263315-35263584,35263765-35263943,
35264229-35264275,35264452-35264541,35264596-35264645,
35264673-35264725,35264886-35265009,35265094-35265369,
35265460-35265593,35265672-35265758,35265864-35265977,
35266180-35266309
Length = 1281
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +1
Query: 199 DVHVSMSKNSRQPYCVSKELVTKPVPNHGV 288
DVH+ +++NSR Y ++K+LV HGV
Sbjct: 798 DVHIVLTENSRDRY-INKKLVAVGRDKHGV 826
>01_05_0564 +
23312419-23312987,23314652-23314751,23314832-23315055,
23315212-23316041,23316161-23316275,23316786-23316905,
23317410-23317450,23317546-23317595,23317684-23317719,
23317836-23317856
Length = 701
Score = 28.3 bits (60), Expect = 6.0
Identities = 23/61 (37%), Positives = 27/61 (44%)
Frame = +3
Query: 174 AHTSGPGQ*CSRFYVQELEAALLREQGAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQG 353
A T+G G YV + + ALL E + E GRA RI RG G GQG
Sbjct: 35 AETAGSGD--DEEYVSDPDDALLPEMRRREASDDEGSEEGRA--RIGSDRGDGDDGDGQG 90
Query: 354 A 356
A
Sbjct: 91 A 91
>10_01_0359 +
3956527-3956616,3957623-3957818,3958102-3959418,
3959482-3960445,3960588-3960648,3961500-3961946
Length = 1024
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -3
Query: 399 SWGRTYVHHDTCYRRHPDRTYEYHH 325
SWGR H D RR P R+ +HH
Sbjct: 303 SWGRD--HADNRLRRSPSRSSNFHH 325
>08_02_1285 - 25881091-25881798
Length = 235
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 120 KERDGAGCSQAPPVRVQGAHTSGPG 194
+E DG G ++A V +GAH +G G
Sbjct: 173 EEEDGEGSAEAMEVEEEGAHLAGAG 197
>06_03_0243 +
18629793-18630047,18630362-18630442,18631911-18632305,
18632471-18632926,18633156-18633247,18633528-18633683,
18635657-18636057
Length = 611
Score = 27.9 bits (59), Expect = 7.9
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = +3
Query: 216 VQELEAALLREQGAGHQTSAESWGTGRAVARIPR-VRGGGTHRSGQGAFGNMCRGGRMFA 392
+++L A RE A + +A + T +A + R GG HR G+G G GG
Sbjct: 473 IKQLLAGGQRELVATGEAAATAAATAKATPPLARRTADGGAHR-GRGGGGAEADGGARRG 531
Query: 393 PTKPWRR 413
WRR
Sbjct: 532 RGGGWRR 538
>05_05_0015 + 21530547-21531047
Length = 166
Score = 27.9 bits (59), Expect = 7.9
Identities = 25/74 (33%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Frame = +3
Query: 204 SRFYVQELEAALLREQGAGHQTSAESWGTGRAVARIPR--VRGGGTHRSGQGAFGNMCRG 377
+RF L+ AL A +TS W GR R+PR V G G G + RG
Sbjct: 76 TRFEYGILKMALRMAVAAAPKTSHRRWRQGRWRRRLPRHPVADGIEDSDGGGGSRALLRG 135
Query: 378 GRMFAPTKPWR-RW 416
R + WR RW
Sbjct: 136 WRR---GRLWRQRW 146
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,870,186
Number of Sequences: 37544
Number of extensions: 463176
Number of successful extensions: 1648
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1643
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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