Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060742.seq
         (677 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)               126   2e-29
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)                     35   0.053
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)                   32   0.49 
SB_16362| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.65 
SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.86 
SB_25030| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)            29   3.5  
SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)                  29   3.5  
SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)              29   4.6  
SB_20102| Best HMM Match : FYVE (HMM E-Value=3.8e-08)                  29   4.6  
SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)               28   6.0  
SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8)                     28   6.0  
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_8252| Best HMM Match : rve (HMM E-Value=0.13)                       28   6.0  
SB_43404| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08)                 28   8.0  
SB_12491| Best HMM Match : rve (HMM E-Value=1.6e-18)                   28   8.0  
SB_10758| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29)           28   8.0  

>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
          Length = 299

 Score =  126 bits (303), Expect = 2e-29
 Identities = 53/55 (96%), Positives = 54/55 (98%)
 Frame = +3

Query: 255 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 419
           AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK WR+WH
Sbjct: 55  AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRKWH 109



 Score = 64.5 bits (150), Expect = 8e-11
 Identities = 30/54 (55%), Positives = 40/54 (74%)
 Frame = +1

Query: 91  ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSK 252
           ARP+++V++E  E+       LP VFKAPIRPDLVN VH +++KN RQPY V+K
Sbjct: 2   ARPVITVFNENGESA--GQTTLPAVFKAPIRPDLVNFVHSNIAKNKRQPYAVNK 53



 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 27/55 (49%), Positives = 40/55 (72%)
 Frame = +2

Query: 512 IEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRN 676
           IEKI E+PLV++D ++ + KT  AV  L+ + A+ D+ K   S+++RAGKGKMRN
Sbjct: 141 IEKIAEVPLVISDAIESVTKTSAAVKLLKAVNAYEDVEKCIDSKKIRAGKGKMRN 195


>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
          Length = 612

 Score = 35.1 bits (77), Expect = 0.053
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -3

Query: 378 HHDTCYRRHPDRTYEYHHHGHAEFGRQHVRYPMIRHWF 265
           HH  CY  H    Y Y+ H H  + R H  YP  RH++
Sbjct: 20  HHYCCYCHH---RYCYYRHHHYCWYRHHYHYPCYRHYY 54


>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
          Length = 453

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -3

Query: 378 HHDTCYRRHPDRTYEYHHHGHAEFGRQHVRY 286
           HH     RH  R + +HHH H E+ R+H RY
Sbjct: 325 HHQRHRHRHRHR-HRHHHHHHHEYNRRH-RY 353


>SB_16362| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 329

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
 Frame = -3

Query: 393 GRTYVHHDTCYRR-HPDRTYEYHHHGHAEFGRQHVRYPMIRHWF-----GDQLLAHAVGL 232
           G  Y HH+ C+        Y    H H     Q +++  +R W+     G++   H +GL
Sbjct: 75  GVHYGHHEGCWNPLMKPYLYGTREHFHIIDLNQTIKHFRVRLWYFVYLYGNREHFHIIGL 134

Query: 231 PRVLGHRNVNIIDQVRTYGRLEH 163
            + + H  V +   V  YG  EH
Sbjct: 135 NQTIKHFRVRLWYFVYLYGNREH 157


>SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -3

Query: 363 YRRHPDRTYEYHHHGHAEFGRQHVRYPMIRHWFGDQ 256
           Y +HP  T+ YHH  H +   ++ ++P + H +  Q
Sbjct: 413 YHQHPQLTHRYHHQ-HPQVIHRYHQHPQVTHRYHQQ 447



 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 363 YRRHPDRTYEYHHHGHAEFGRQHVRYPMIRH 271
           Y +HP  T+ YH H      R H ++P + H
Sbjct: 232 YHQHPQVTHRYHQHPQVTH-RYHQQHPQVTH 261


>SB_25030| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -3

Query: 342 TYEYHHHGHAEFGRQHVRYPMI-RHWFGDQLLAHAVGLP-RVLGHRNVN 202
           +Y++HHHG  E   Q V    I R W   +L +H    P RV+G   ++
Sbjct: 21  SYQWHHHGTGETDDQPVTTTRITRTWVNRRLNSHRTIKPSRVIGRAQIH 69


>SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -3

Query: 387 TYVHHDTCYRRHPDRTYEYHHHGHA 313
           TY H DT  R+HPD     H   HA
Sbjct: 123 TYTHQDTQMRKHPDTQIYVHAPRHA 147


>SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)
          Length = 694

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 9/35 (25%), Positives = 14/35 (40%)
 Frame = -3

Query: 390 RTYVHHDTCYRRHPDRTYEYHHHGHAEFGRQHVRY 286
           R + HH   +  H    + +HHH H      H  +
Sbjct: 209 RHHQHHQHHHHHHHQHNHHHHHHNHHHHHHHHYHH 243


>SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)
          Length = 1080

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +3

Query: 267  TSAESWGTGRAVARIPR-VRGGGTHRSGQGAFGNMCRGGR 383
            T +E   +G ++ R PR  RGGG    G G  G   RGGR
Sbjct: 983  TPSEPSSSGSSIVRRPRRRRGGGGGGGGGGGGGGGRRGGR 1022


>SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)
          Length = 628

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 18/54 (33%), Positives = 21/54 (38%)
 Frame = +3

Query: 252 GAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 413
           G   Q     WG G+    + R  GGG  R   G +G M  GG    P   W R
Sbjct: 14  GGWGQGPGGGWGRGQG-GGMGRGPGGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 66


>SB_20102| Best HMM Match : FYVE (HMM E-Value=3.8e-08)
          Length = 910

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 19/45 (42%), Positives = 20/45 (44%)
 Frame = +1

Query: 439 SGERPWRQPLLLPASQHSFRLEDNY*KDSRTSPGCSRQSPGDQQD 573
           SG  P   PLLLP S H   LE      S TSP     +P D  D
Sbjct: 661 SGMSPPLSPLLLPPSPHPITLEGADSSSSITSP--ISPAPSDDSD 703


>SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)
          Length = 1098

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/43 (39%), Positives = 19/43 (44%)
 Frame = +3

Query: 285 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 413
           G GR + R P   GGG  R   G +G M  GG    P   W R
Sbjct: 271 GQGRGMGRGP---GGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 310


>SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8)
          Length = 193

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 378 HHDTCYRRHPDRTYEYHHH 322
           HH   YR H  + Y +HHH
Sbjct: 96  HHHQHYRHHRHQHYRHHHH 114


>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3486

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 158  GRGLAAPCTVSLFSEYTDTKGRATDRLI 75
            G+GL   C+V+L S Y  T+G+   RL+
Sbjct: 3163 GKGLTTWCSVNLDSVYLSTEGKEVYRLV 3190


>SB_8252| Best HMM Match : rve (HMM E-Value=0.13)
          Length = 264

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 384 YVHHDTCYRRHPDRTYEYHHHGH 316
           Y HH   +RR   R + +HHH H
Sbjct: 233 YHHHHHHHRRRRRRRHHHHHHHH 255


>SB_43404| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 522

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = -3

Query: 390 RTYVH-HDTCYRRHPDRTYEYHHHGHAEFGRQHVRY 286
           R Y H    CYRR   R + YHHH       + +RY
Sbjct: 216 RCYYHCRRRCYRRR--RRHFYHHHPRRYHNHRRLRY 249


>SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08)
          Length = 839

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 378 HHDTCYRRHPDRTYEYHHH 322
           HH   + RH  R + YHHH
Sbjct: 570 HHHLHHHRHHHRHHHYHHH 588


>SB_12491| Best HMM Match : rve (HMM E-Value=1.6e-18)
          Length = 1106

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = +2

Query: 389 RPHEALAALASSRQPPTAESGLGGSRCCYRRPSTR 493
           R H AL A  S+  P T  SG GG R   RR + R
Sbjct: 265 RDHTALKAGLSALAPVTDPSGHGGERLAERRHNGR 299


>SB_10758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 845

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
 Frame = +1

Query: 67  SSEMSLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPY-- 240
           S +M L   R  +  Y+E    ++   + LP V  AP+  D+V +V  S  K S + Y  
Sbjct: 475 SPQMPLDFPRSFLEDYAEACANLK---QSLPQVHLAPLASDIVREVESSEVKLSLKFYVS 531

Query: 241 --CVSKELVTK 267
             C S E V K
Sbjct: 532 ENCPSVEAVVK 542


>SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29)
          Length = 1779

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 378 HHDTCYRRHPDRTYEYHHHGH 316
           HH   + RH DR + + HH H
Sbjct: 340 HHRNKHYRHHDRNHHHRHHHH 360


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,472,690
Number of Sequences: 59808
Number of extensions: 463837
Number of successful extensions: 1373
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1324
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)