Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060742.seq
         (677 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   112   2e-25
U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical pr...    29   4.0  
Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical pr...    28   5.3  
U00031-9|AAK18871.1|  470|Caenorhabditis elegans Hypothetical pr...    27   9.3  
AC087794-4|AAG53704.1|  275|Caenorhabditis elegans Hypothetical ...    27   9.3  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  112 bits (270), Expect = 2e-25
 Identities = 54/94 (57%), Positives = 58/94 (61%)
 Frame = +3

Query: 255 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXX 434
           AG Q SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAP K +RRWH     
Sbjct: 57  AGKQHSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNI 116

Query: 435 XXXXXXXXXXXXXXXXXXXXQARGQLLKRFPNFP 536
                               QARG ++ +    P
Sbjct: 117 AQKRYAVSSAIAASGIPALLQARGHVIDQVAEVP 150



 Score = 78.6 bits (185), Expect = 4e-15
 Identities = 34/56 (60%), Positives = 46/56 (82%)
 Frame = +2

Query: 509 IIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRN 676
           +I+++ E+PLVV+DKV+   KTK+AV+FLRR   W+DI KVY S+R RAGKGK+RN
Sbjct: 142 VIDQVAEVPLVVSDKVESFRKTKEAVVFLRRSHLWADIEKVYNSKRNRAGKGKLRN 197



 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 26/53 (49%), Positives = 35/53 (66%)
 Frame = +1

Query: 91  ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 249
           ARPLV+VY EK E  Q   + LP VF+ PIRPDLV+ +   + +N RQ + V+
Sbjct: 3   ARPLVTVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVN 54


>U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical
           protein F53A9.9 protein.
          Length = 147

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 378 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 295
           HHD  +++H  + ++ HHHGH   G  H
Sbjct: 120 HHDGHHKKHGRKEHD-HHHGH-HHGHHH 145


>Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical
           protein K03H1.5 protein.
          Length = 1385

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +2

Query: 287 YRTCCRPNSACPWWWYS*VRSGC--LR*HVSWWTYVRPH 397
           YRTCC+    C ++++  + +GC   R   + + Y  PH
Sbjct: 823 YRTCCKYADHCEFYYWRRMTNGCQDYRAPAAGYIYGEPH 861


>U00031-9|AAK18871.1|  470|Caenorhabditis elegans Hypothetical
           protein B0361.8 protein.
          Length = 470

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = -2

Query: 676 VAHFTLTSTKTLRLVHLKDIRPCLEAPQEDDSLFGLVDLLDFVGYN 539
           VA   L  TKT+RL+ +  IRP      + + L  + + L+ +GYN
Sbjct: 270 VAESLLEDTKTVRLLSVGQIRPEKNHKLQLEVLHDVKEPLEKMGYN 315


>AC087794-4|AAG53704.1|  275|Caenorhabditis elegans Hypothetical
           protein Y32G9A.5 protein.
          Length = 275

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 22/69 (31%), Positives = 27/69 (39%)
 Frame = +1

Query: 397 RSPGGVGIVASTSDSGERPWRQPLLLPASQHSFRLEDNY*KDSRTSPGCSRQSPGDQQDQ 576
           R PG     ASTSD+ + P       P    + R   NY   + TS   + Q PG  Q  
Sbjct: 149 RYPGNYNAFASTSDAPQYPGSSQ--YPQGSSAPRYPGNYNAFASTSD--APQYPGSSQYP 204

Query: 577 TGCHLPEAP 603
            G   P  P
Sbjct: 205 QGSSAPRYP 213


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,368,252
Number of Sequences: 27780
Number of extensions: 331747
Number of successful extensions: 986
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)