Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060742.seq
         (677 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   3.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.7  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   4.7  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   6.2  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 333 YHHHGHAEFGRQHVRY 286
           +HHH H     QH+ Y
Sbjct: 351 HHHHHHQTQSLQHLHY 366


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
 Frame = +2

Query: 443  ESGLGGSRCCYRRPSTRSG*RTIIEKIPELPLVVADKVQEINKTKQAVIF--LRRLKAWS 616
            ++G+GG+    RRP  R     I     +LP V        ++ K+  +   +R    W 
Sbjct: 1624 QTGVGGATLDKRRPDLRDELGYIAPPNRKLPPVPGSNYNTCDRIKRGTVIRSIRSHSTWD 1683

Query: 617  DILKVYK 637
                +Y+
Sbjct: 1684 PRRHMYE 1690


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 232 QPYCVSKELVTKPVPNHGVPDV 297
           QP  V+++L +   P HG P V
Sbjct: 259 QPVTVNRQLNSDVQPGHGSPPV 280


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 345 GQGAFGNMCRGGRMFAP 395
           G G FG++CRG     P
Sbjct: 640 GGGEFGDVCRGKLKLPP 656


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,738
Number of Sequences: 438
Number of extensions: 3841
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)