Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060742.seq
         (677 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S...   120   9e-28
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...   120   9e-28
At1g76010.1 68414.m08825 expressed protein                             30   1.2  
At1g57750.1 68414.m06552 cytochrome P450, putative similar to cy...    29   2.1  
At1g48410.2 68414.m05409 argonaute protein (AGO1) identical to S...    29   2.8  
At1g48410.1 68414.m05408 argonaute protein (AGO1) identical to S...    29   2.8  
At5g07520.1 68418.m00861 glycine-rich protein (GRP18) Oleosin; g...    28   4.9  
At4g39480.1 68417.m05585 cytochrome P450 family protein contains...    28   4.9  
At5g17650.1 68418.m02069 glycine/proline-rich protein glycine/pr...    28   6.5  
At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp...    27   8.6  
At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp...    27   8.6  
At1g80480.1 68414.m09427 PRLI-interacting factor L, putative sim...    27   8.6  

>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
           roibosomal protein L4, Arabidopsis thaliana,
           EMBL:CAA79104
          Length = 407

 Score =  120 bits (289), Expect = 9e-28
 Identities = 55/94 (58%), Positives = 59/94 (62%)
 Frame = +3

Query: 255 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXX 434
           AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWH     
Sbjct: 64  AGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNV 123

Query: 435 XXXXXXXXXXXXXXXXXXXXQARGQLLKRFPNFP 536
                                ARG  ++  P  P
Sbjct: 124 NMKRHAIVSAIAATAVPALVMARGHKIENVPEMP 157



 Score = 58.4 bits (135), Expect = 4e-09
 Identities = 30/59 (50%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
 Frame = +1

Query: 85  SVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKE 255
           + ARPLV+V     +  T Q     LP V  AP+RPD+VN VH  +S NSRQPY VSK+
Sbjct: 5   AAARPLVTVQGLDGDMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKK 63



 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 25/55 (45%), Positives = 36/55 (65%)
 Frame = +2

Query: 512 IEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRN 676
           IE +PE+PLVV+D  + + KT  A+  L+++ A+ D  K   S  +R GKGKMRN
Sbjct: 150 IENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKAKNSIGIRPGKGKMRN 204


>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score =  120 bits (289), Expect = 9e-28
 Identities = 55/94 (58%), Positives = 59/94 (62%)
 Frame = +3

Query: 255 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXX 434
           AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWH     
Sbjct: 63  AGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNV 122

Query: 435 XXXXXXXXXXXXXXXXXXXXQARGQLLKRFPNFP 536
                                ARG  ++  P  P
Sbjct: 123 NMKRHAIVSAIAATAVPALVMARGHKIENVPEMP 156



 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 30/62 (48%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
 Frame = +1

Query: 76  MSLSVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 249
           M+ + ARPLV++ +   +  T Q +   LP V  AP+RPD+VN VH  +S NSRQPY VS
Sbjct: 1   MAAAAARPLVTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVS 60

Query: 250 KE 255
           K+
Sbjct: 61  KK 62



 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 25/55 (45%), Positives = 36/55 (65%)
 Frame = +2

Query: 512 IEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRN 676
           IE +PE+PLVV+D  + + KT  A+  L+++ A+ D  K   S  +R GKGKMRN
Sbjct: 149 IENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKAKNSIGIRPGKGKMRN 203


>At1g76010.1 68414.m08825 expressed protein
          Length = 350

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/43 (41%), Positives = 19/43 (44%)
 Frame = +3

Query: 249 QGAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRG 377
           QG G     +  G GR   R  R RGGG  R G G F N   G
Sbjct: 303 QGRGGYDGPQGRGRGRGRGRGGRGRGGG--RGGDGGFNNRSDG 343


>At1g57750.1 68414.m06552 cytochrome P450, putative similar to
           cytochrome P450 GI:4688670 from [Catharanthus roseus]
          Length = 497

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/49 (32%), Positives = 29/49 (59%)
 Frame = +1

Query: 100 LVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 246
           LV +++  SE+++    PLPF  K+P +PD++   H  +  NS+   C+
Sbjct: 351 LVYLHAALSESMR-LYPPLPFNHKSPAKPDVLPSGH-KVDANSKIVICI 397


>At1g48410.2 68414.m05409 argonaute protein (AGO1) identical to
           SP|O04379 Argonaute protein (AGO1) {Arabidopsis
           thaliana}; contains Pfam profiles PF02171: Piwi domain,
           PF02170: PAZ domain
          Length = 1050

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 249 QGAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 383
           +G+G + +    G GR   R    +GGG H+ G+G      +GGR
Sbjct: 15  EGSGSREAGPVSGGGRGSQRGGFQQGGGQHQGGRGYTPQPQQGGR 59


>At1g48410.1 68414.m05408 argonaute protein (AGO1) identical to
           SP|O04379 Argonaute protein (AGO1) {Arabidopsis
           thaliana}; contains Pfam profiles PF02171: Piwi domain,
           PF02170: PAZ domain
          Length = 1048

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 249 QGAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 383
           +G+G + +    G GR   R    +GGG H+ G+G      +GGR
Sbjct: 15  EGSGSREAGPVSGGGRGSQRGGFQQGGGQHQGGRGYTPQPQQGGR 59


>At5g07520.1 68418.m00861 glycine-rich protein (GRP18) Oleosin;
           glycine-rich protein 18 (GRP18) PMID:11431566;
          Length = 228

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
 Frame = +3

Query: 225 LEAALLREQGAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQ---GAFGNMCRGGRMFAP 395
           +  AL+R +  G + +AE   + + + ++P   G G    G+   G FGN   GG  F  
Sbjct: 76  MAVALIRRR-MGAKPTAEGTSSAQPLLKLPVYGGYGGFWGGKKFSGTFGNKPGGGNPFGD 134

Query: 396 TKPW 407
              W
Sbjct: 135 ISKW 138


>At4g39480.1 68417.m05585 cytochrome P450 family protein contains
           Pfam profile: PF00067 cytochrome P450
          Length = 989

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 151 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 246
           P+PF  K+P +PD++   H  +  NSR  +C+
Sbjct: 384 PVPFNHKSPAKPDVLPSGH-KVKANSRILFCL 414



 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +1

Query: 151 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 246
           P+PF  K+P +PD++   H  +  NS+  +C+
Sbjct: 857 PVPFQHKSPTKPDVLPSGH-KVDANSKILFCL 887


>At5g17650.1 68418.m02069 glycine/proline-rich protein
           glycine/proline-rich protein GPRP - Arabidopsis
           thaliana, EMBL:X84315
          Length = 173

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -3

Query: 378 HHDTCYRRHPDRTYEYHHHGHAEF 307
           HH   Y  H    Y Y +HGH +F
Sbjct: 122 HHHGHYGHHHGHGYGYGYHGHGKF 145


>At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein contains Pfam domain PF01805:
           Surp module
          Length = 844

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -3

Query: 390 RTYVHHDTCYRRHPDRTY-EYHHHGHAEFGRQHVRYPMIRH 271
           R++ H    + +H D +  E+HHH H    R+H     + H
Sbjct: 735 RSHHHRSRKHEKHRDSSDDEHHHHRHRSSRRKHEDSSDVEH 775


>At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein contains Pfam domain PF01805:
           Surp module
          Length = 843

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -3

Query: 390 RTYVHHDTCYRRHPDRTY-EYHHHGHAEFGRQHVRYPMIRH 271
           R++ H    + +H D +  E+HHH H    R+H     + H
Sbjct: 735 RSHHHRSRKHEKHRDSSDDEHHHHRHRSSRRKHEDSSDVEH 775


>At1g80480.1 68414.m09427 PRLI-interacting factor L, putative
           similar to PRLI-interacting factor L [Arabidopsis
           thaliana] GI:11139268; contains Pfam profile PF02492:
           Cobalamin synthesis protein/P47K
          Length = 444

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -3

Query: 378 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 295
           HHD  +  H D  +++ HH H      H
Sbjct: 311 HHDHDHDHHHDHNHDHDHHHHDGHDHHH 338


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,841,460
Number of Sequences: 28952
Number of extensions: 318900
Number of successful extensions: 1060
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)