Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060741.seq
(686 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 31 0.21
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 28 1.5
SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|... 27 2.5
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 27 3.4
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy... 26 4.4
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ... 26 5.9
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c... 26 5.9
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste... 26 5.9
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 25 7.8
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb... 25 7.8
>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
Sap155|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1188
Score = 30.7 bits (66), Expect = 0.21
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = +1
Query: 52 DKQY*VVMEKEHQPDSMATITMKPEYPPSEVYSTSEPPPAY 174
+K+ VV EK P + T E PSE Y+ EPPP Y
Sbjct: 262 NKEVNVVEEKLRPPVRLLTEEELNELLPSEGYAILEPPPGY 302
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 91 PDSMATITMKPEYPPSEVYSTSEPPP 168
P +T + P PP+ STS PPP
Sbjct: 293 PTGNSTTPVTPTVPPTSTSSTSTPPP 318
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 91 PDSMATITMKPEYPPSEVYSTSEPPP 168
P +T + P PP+ STS PPP
Sbjct: 347 PTGNSTTPVTPTVPPTSTSSTSTPPP 372
>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 456
Score = 27.1 bits (57), Expect = 2.5
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 79 KEHQPDSMATITMKPEYPPSEVYSTS 156
+ + DS +TI +PEYPP +++S
Sbjct: 306 RRNSHDSNSTIICEPEYPPDTSFNSS 331
>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 26.6 bits (56), Expect = 3.4
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +1
Query: 124 EYPPSEVYSTSEPPPAYRHRVSTSVQIAKIAALTVVASSFILGTL 258
E+ + + S PP + + STSV A A+ +V S+ LG+L
Sbjct: 215 EHADRSIKTHSSAPPLNQQKSSTSVNDAVSKAIQLVKSTSDLGSL 259
>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 596
Score = 26.2 bits (55), Expect = 4.4
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Frame = +3
Query: 444 VLPETSQPSSSRPSLFKDDALNMP---SPK*TKTNCRKLTTIRMTHQTRVMRVLSPTVLL 614
+L E S S P+L K +LN P S + N + +T + QT ++L+ ++
Sbjct: 191 ILAEASTKSKMFPALMKVASLNFPDVISVSLSDNNLQSVTAVTTLAQT-WPKLLNLSLAN 249
Query: 615 KRTTNLKRLD 644
R T+L LD
Sbjct: 250 NRITSLSDLD 259
>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 25.8 bits (54), Expect = 5.9
Identities = 17/63 (26%), Positives = 33/63 (52%)
Frame = +3
Query: 450 PETSQPSSSRPSLFKDDALNMPSPK*TKTNCRKLTTIRMTHQTRVMRVLSPTVLLKRTTN 629
P+ +QP+S PS ++ +MPS + ++ ++ I + + +LSP+ K + N
Sbjct: 310 PQLAQPTSHVPSFIDTNSPSMPSIS-SVSSYQQQHRIPKLNASNYSPLLSPSSHRKTSGN 368
Query: 630 LKR 638
L R
Sbjct: 369 LSR 371
>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -1
Query: 158 SDVLYTSEGGYSGFIVIVAIESGWCSFSIT 69
S V +G Y+GFIV++A+ S F ++
Sbjct: 211 SSVNSVGDGTYAGFIVLMAVGSALALFMVS 240
>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
type|Schizosaccharomyces pombe|chr 1|||Manual
Length = 529
Score = 25.8 bits (54), Expect = 5.9
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -2
Query: 517 LGMLSASSLKRLGREDDGWLVSGNTEDSMGGTPCKAWAFASGKGSSAT 374
+ ML+ RL ++ D WL+SG + K W F GSSAT
Sbjct: 212 VSMLTLYRPLRLSQKQDLWLLSGFALQHRTLSSTKGW-FNGFAGSSAT 258
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1465
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -3
Query: 138 RRRIFRLHSYCSHRVWLVFFFHHDLILFIKIYL 40
RRRIFR H +W+ FF L++ +IY+
Sbjct: 32 RRRIFRPHFSQFWTIWMK-FFSIALVIITQIYV 63
>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 224
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 88 QPDSMATITMKPEYPPSEVYSTSEPP 165
QP + +T+ P PPS Y+T++PP
Sbjct: 86 QPGNASTMYASP--PPSSNYNTAKPP 109
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,708,406
Number of Sequences: 5004
Number of extensions: 54850
Number of successful extensions: 190
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -