Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060741.seq
(686 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0004 + 35300-35533,35617-35732,39044-39287,39451-40578,406... 30 1.5
12_02_1060 - 25752181-25754229 29 2.6
03_02_0909 - 12310460-12310759,12310882-12310989,12311099-123112... 29 2.6
02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57... 29 2.6
05_01_0281 + 2186500-2187435,2187518-2187616,2187707-2187772,218... 29 3.5
12_02_0416 - 18891945-18892319,18892416-18892550,18892634-18893638 29 4.6
08_02_0572 - 18842539-18842950,18843242-18843613,18844947-18845671 29 4.6
12_02_1197 + 26915933-26916298 28 6.0
12_02_0963 + 24857033-24857500,24857611-24857745,24858430-24858516 28 6.0
05_04_0285 - 19825106-19826988,19828479-19828529,19830013-19830361 28 6.0
05_01_0024 - 164618-165139,166884-166949,167046-167216,167321-16... 28 6.0
02_05_1006 + 33448476-33448915,33449016-33449083,33449681-334497... 28 6.0
01_03_0200 + 13744735-13745037,13745071-13745610,13745704-137458... 28 6.0
09_02_0286 - 6898041-6898144,6898881-6899005,6899158-6899207,689... 28 8.0
08_01_0682 + 5974622-5974745,5976182-5976371,5976953-5977024,597... 28 8.0
>07_01_0004 +
35300-35533,35617-35732,39044-39287,39451-40578,
40657-40833
Length = 632
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Frame = +3
Query: 384 EPLPLANAHAL--HGVPPM--LSSVLPETSQPSSSRPSLFKDDALNMPSP 521
EPLPL +L + PP +S+ + T PS + PS+ +D L++P P
Sbjct: 420 EPLPLPPLSSLLSNDQPPTSTVSAKMDTTDLPSLNLPSILRDPLLHLPLP 469
>12_02_1060 - 25752181-25754229
Length = 682
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = +1
Query: 160 PPPAYRHRVSTSVQIAKIAALTVVASSF--ILGTLYWL 267
PPPA SV I +A LTV A SF +LG WL
Sbjct: 265 PPPAPPAPPPPSVSIGLVAGLTVGAVSFVVVLGVSIWL 302
>03_02_0909 -
12310460-12310759,12310882-12310989,12311099-12311272,
12311370-12311490,12311569-12311651,12311754-12312420,
12314073-12314440
Length = 606
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Frame = +3
Query: 384 EPLPLANAHALHGVPPMLSSVLPETSQPSSSR---PSLFKDDALNMPSPK*TKTNCRKLT 554
+P P + + VP + S LPE P ++ P + PSP + R+
Sbjct: 55 DPTPTSVTEPANAVPTRVPSPLPEPRIPRAAAIRGPLAARPHEFAEPSPSTRRRFNRRSP 114
Query: 555 TIRMTHQTRVMRVLSPTVLLKRTTN 629
R HQ R ++++S + TT+
Sbjct: 115 QRRPPHQRRFLKMVSSEISSVTTTH 139
>02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-579174,
579266-579370,579975-580028,580244-580344,580454-581423,
582030-582203,582341-582643,582719-582856,582993-583247,
584230-584370,585008-585289,585395-585540,585627-585690,
585723-585799,586285-586301,587728-587867,587972-588029,
588121-588218,588727-588776,589260-589743
Length = 2630
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +3
Query: 387 PLPLANAHA-LHGVPPMLSSVLPETSQPSSSRPSLFKDDALN 509
P P A +H H P +L+S+LP PSSS PSL +LN
Sbjct: 2522 PSPYATSHGNQHQRPSILASLLPFVL-PSSSNPSLTAPLSLN 2562
>05_01_0281 +
2186500-2187435,2187518-2187616,2187707-2187772,
2187850-2188266
Length = 505
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 115 MKPEYPPSEVYSTSEPPPAYRHRVSTSVQ 201
M P PP +++ PPP + H +T+V+
Sbjct: 457 MFPAAPPMSMFAPPPPPPPFPHAAATAVE 485
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +1
Query: 85 HQPDSMA-TITMKPEYPPSEVYSTSEPPPAYRHRVSTS 195
H+ D+ A T T+ PPSE + PPPA +TS
Sbjct: 244 HRLDTAAATATVAQRLPPSEARAPDAPPPAATATATTS 281
>12_02_0416 - 18891945-18892319,18892416-18892550,18892634-18893638
Length = 504
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +3
Query: 528 TKTNCRKLTTIRMTHQTRVMRVLSPTVLLKRTTNLKRLDRCSNCLFSL 671
T T + ++ +R+T R MR+L+ + + + L RC CL L
Sbjct: 330 TTTVVKGVSVVRLTEAVRTMRILAINMFVLNLAKVIDLMRCFPCLEKL 377
>08_02_0572 - 18842539-18842950,18843242-18843613,18844947-18845671
Length = 502
Score = 28.7 bits (61), Expect = 4.6
Identities = 23/73 (31%), Positives = 27/73 (36%)
Frame = -3
Query: 423 LHAKRGHLLVAKAHPLPGHHFRRLCLPKRVLCRALHPAALADGMMNELLPNSKPI*SSQD 244
+H H H L G F L P + HPAA G + S Q+
Sbjct: 316 MHKFCAHAPSTLYHHLFGRTFELLAKPPQGRPEKPHPAATGGGRGESGGRCKCSLCSRQE 375
Query: 243 EGGSDHC*CCNLR 205
E G DHC C LR
Sbjct: 376 EEGPDHC-CRRLR 387
>12_02_1197 + 26915933-26916298
Length = 121
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 164 GGSDVLYTSEGGYSGFIVIVAIESGW 87
GG DVL + GG +++VA ES W
Sbjct: 3 GGEDVLVVAPGGGRDALLLVAQESAW 28
>12_02_0963 + 24857033-24857500,24857611-24857745,24858430-24858516
Length = 229
Score = 28.3 bits (60), Expect = 6.0
Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 2/90 (2%)
Frame = +3
Query: 381 DEPLP-LANAHALHGVPPMLSSVLPETSQPS-SSRPSLFKDDALNMPSPK*TKTNCRKLT 554
+ PLP LANA L + + T P + P LF ++ K T+C L
Sbjct: 125 ETPLPQLANA-VLRAMNDSKFYTVGNTKMPYVKNAPRLFALANVSAEFKKIASTSCTGLL 183
Query: 555 TIRMTHQTRVMRVLSPTVLLKRTTNLKRLD 644
TIR + +L T+L + TN R D
Sbjct: 184 TIRPESTLVRVSILLATLLSRLRTNFCRFD 213
>05_04_0285 - 19825106-19826988,19828479-19828529,19830013-19830361
Length = 760
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 408 HALHGVPPMLSSVLPETSQPSSSRPSLFKDDALNMPS 518
HA+ G P+ SV PE +P +P + +A ++PS
Sbjct: 471 HAVKGFQPLAPSVKPEMGRPQFVQPEKRRLNANSVPS 507
>05_01_0024 -
164618-165139,166884-166949,167046-167216,167321-167422,
167538-167600,167679-167825,168234-168359,168742-168921,
169183-169322,169688-169861,170096-170123
Length = 572
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +1
Query: 400 QMPTLCMEYRPCCLQCYLRRASRHLHDPVSSKTTHSTCRVQNKR 531
Q PT C E R C QCY+ A L + K + R+ +R
Sbjct: 522 QNPTPCTEERSNCRQCYVSNAQDPLKCAEAVKRFEACVRLARQR 565
>02_05_1006 +
33448476-33448915,33449016-33449083,33449681-33449751,
33449905-33450156,33450473-33450636,33450731-33450773,
33451044-33451161,33451384-33451481,33451550-33451594
Length = 432
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -3
Query: 108 CSHRVWLVFFFHHDL-ILFIKIYLLLVS 28
C H+ WL + HH++ ILF+K L L++
Sbjct: 403 CFHKSWLRYNAHHNIQILFVKHNLRLIT 430
>01_03_0200 + 13744735-13745037,13745071-13745610,13745704-13745862,
13748992-13749123,13749282-13749472,13749541-13749792,
13750248-13750323,13750411-13750602,13750688-13750689,
13753230-13753287,13753736-13754941
Length = 1036
Score = 28.3 bits (60), Expect = 6.0
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = +3
Query: 336 LALEGRAYGNDALVADEPLPLANAHALHGVPPMLSSVLPETSQPSSSRPSLFKDDALNMP 515
LALEG+ G +A P+ L L G +L +P + PS++ SL + N+P
Sbjct: 826 LALEGQINGGQGRLA-APMGLCFFACLFGACFVLVQTIPPSPPPSATDTSLRANIVRNLP 884
Query: 516 S 518
+
Sbjct: 885 A 885
>09_02_0286 - 6898041-6898144,6898881-6899005,6899158-6899207,
6899245-6899386,6899951-6900020,6900077-6900216,
6900291-6900365,6901083-6904723
Length = 1448
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/23 (47%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
Frame = -3
Query: 150 AVYF-RRRIFRLHSYCSHRVWLV 85
AV+F R++ RLH +CSH V+++
Sbjct: 1233 AVHFPNRKMRRLHEFCSHSVFVI 1255
>08_01_0682 +
5974622-5974745,5976182-5976371,5976953-5977024,
5977482-5977553,5977688-5977759,5977842-5977913,
5978690-5978761,5978855-5978926,5979017-5979091,
5979529-5979594,5979821-5979885,5979975-5980354,
5980438-5980636,5980713-5980763,5980955-5981073,
5981190-5981400,5981524-5981755,5981842-5981992,
5982089-5982447,5982750-5982768
Length = 890
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +3
Query: 204 REDCSTNSGRFLLHLGNFILASSWVAA 284
R CS + GR LL L ++A SWVAA
Sbjct: 2 RRRCSGSHGRQLLLLYWLVIACSWVAA 28
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,834,164
Number of Sequences: 37544
Number of extensions: 418053
Number of successful extensions: 1450
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1447
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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