Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060741.seq
(686 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31112| Best HMM Match : Dynein_heavy (HMM E-Value=0) 33 0.22
SB_4303| Best HMM Match : Defensin_beta (HMM E-Value=0.85) 30 1.5
SB_653| Best HMM Match : Sas10_Utp3 (HMM E-Value=2.2) 30 1.5
SB_48526| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_42947| Best HMM Match : 7tm_1 (HMM E-Value=0.00011) 29 3.5
SB_11571| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_31792| Best HMM Match : DUF1373 (HMM E-Value=2.5) 28 6.2
SB_20145| Best HMM Match : WD40 (HMM E-Value=2.4e-09) 28 6.2
SB_585| Best HMM Match : G_glu_transpept (HMM E-Value=0.00035) 28 6.2
SB_45442| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_57991| Best HMM Match : rve (HMM E-Value=1.1e-10) 28 8.1
SB_45156| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_31796| Best HMM Match : SAP (HMM E-Value=3.5e-10) 28 8.1
>SB_31112| Best HMM Match : Dynein_heavy (HMM E-Value=0)
Length = 2532
Score = 33.1 bits (72), Expect = 0.22
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Frame = +3
Query: 273 WVAARSSCHQLEQLDAMLDK------ELALEGRAYGNDALVADEPLPLANAHALHGVPPM 434
W ARS+ + E+LD + +K +L LEG G +PL N + + + M
Sbjct: 336 WCNARSNAKEREELDRLFEKYVPASVDLILEGILDGKQGKKLKTIIPLTNLNMVEQLSHM 395
Query: 435 LSSVLPETSQPSSSRPSL 488
L ++LP + P +
Sbjct: 396 LDALLPPAESSNFLGPDV 413
>SB_4303| Best HMM Match : Defensin_beta (HMM E-Value=0.85)
Length = 203
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +1
Query: 379 RMSLCH*QMPTLC-MEYRPCCLQCYLRRASRHLHDPVSSKTTHSTCRVQNKRRQI 540
R+ + H + LC M + CC C+ R H+ + THS C V + R +
Sbjct: 103 RIVVLHDTLALLCYMSHSHCCATCHTRTVVLHVTLALLCYMTHSHCCVTCRTRTV 157
>SB_653| Best HMM Match : Sas10_Utp3 (HMM E-Value=2.2)
Length = 835
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Frame = +3
Query: 375 VADEPLPLANAHALHGVPPMLSSVLPETSQPSSSRPSLFKDDALNMPSPK*TKTNCRKLT 554
+ + + H + G PP S TS+P++ PS + D +N + + +
Sbjct: 569 ITPSSISTSEEHKIAGKPPRPKSSKRRTSKPTTHLPSSKQHDTVNDDTKPIPHPPSVRKS 628
Query: 555 TIRMTHQTRVMRVLSPTVL--LKRTTN 629
++R + +R LSP V+ +K+T +
Sbjct: 629 SLRKSFSQGDVRCLSPEVISSVKKTVS 655
>SB_48526| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 81
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +1
Query: 91 PDSMATITMKPEYPPSEVYSTSEPPPAYRHRVS 189
PD AT + PEY + +PPP Y ++
Sbjct: 28 PDMPATFQIPPEYTVEDPIKIDQPPPPYMDTIT 60
>SB_42947| Best HMM Match : 7tm_1 (HMM E-Value=0.00011)
Length = 380
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -2
Query: 568 VILIVVNFLQFVFVYFGLGMLSASSLKRLGREDDGWLVSGNTEDSMGG 425
V +I N + FVY G + +R+ R DDG+ +G D G
Sbjct: 313 VCMIYTNAVINAFVYAGFNSEFRRTFRRIYRRDDGFSSNGGNRDRRRG 360
>SB_11571| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 469
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +1
Query: 79 KEHQPDSMATITMKPEYPPSEVYSTSEPPPAYRHRVSTSVQ 201
+ H P S + T +P PP +T++ PPAY R S ++Q
Sbjct: 91 RPHTPPSCQSNTPRPLTPPPRQSNTTQ-PPAYPPRQSYALQ 130
>SB_31792| Best HMM Match : DUF1373 (HMM E-Value=2.5)
Length = 696
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = +3
Query: 408 HALHGVPPMLSSVLPETSQPSSSRPSLFKDDALNMPSPK*TKTNCRKLTTIRMTHQTRVM 587
H+L G P LS E QP +++P D L PS + LT + +Q ++
Sbjct: 417 HSLLGQPDPLSWAQQELQQPQTAQPQPLPQDTL--PSSSLFSSPADPLTA--LGYQDQIS 472
Query: 588 RVLSP 602
+ LSP
Sbjct: 473 QALSP 477
>SB_20145| Best HMM Match : WD40 (HMM E-Value=2.4e-09)
Length = 682
Score = 28.3 bits (60), Expect = 6.2
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Frame = +3
Query: 435 LSSVLPETSQPSSSRPSLFKDDALNMPSPK*TKTNCRK-----LTTIRMTHQTRVMRVLS 599
+S L + +QP P L +D++ +P P+ RK +TTI T+ + +L
Sbjct: 586 VSPNLRKATQPKEIIPVLVDEDSIFIPVPQQDTQQQRKHQQPLITTIIRTNNDNISSLLI 645
Query: 600 PTVLLKRTTNLKRL 641
T++ N+ L
Sbjct: 646 TTIMRTNNDNISNL 659
>SB_585| Best HMM Match : G_glu_transpept (HMM E-Value=0.00035)
Length = 169
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/30 (36%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = +3
Query: 417 HGVPPMLSSVLPETSQP-SSSRPSLFKDDA 503
+G+PP ++ + +P SS+ PS+F+DD+
Sbjct: 31 YGIPPSAANFIVPRKRPLSSTAPSVFRDDS 60
>SB_45442| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1103
Score = 27.9 bits (59), Expect = 8.1
Identities = 34/141 (24%), Positives = 56/141 (39%), Gaps = 5/141 (3%)
Frame = +3
Query: 264 ASSWVAARSSCHQLEQLDAMLDKELALEGRAYGNDALVADEPLPLANAHALHGVP-PMLS 440
A S RS + E DA+LD E + R DEP+ N L G P P+L
Sbjct: 192 ALSKAVGRSLLNYCELEDALLDVETVMNNRPLVYQGEEFDEPVITPNL-LLRGRPVPILE 250
Query: 441 SVLPETSQPSS-SRPSLFKDDALNMPSPK*TKTNCRKLTTIRMTHQTR---VMRVLSPTV 608
L + S + +R F + + T+ R L + H+ R ++ PT+
Sbjct: 251 EDLEKLSDAGNVTRRMRFIQRSKEDLKKRFTREYVRSLEERQQKHEERSGEQLKGARPTI 310
Query: 609 LLKRTTNLKRLDRCSNCLFSL 671
+R L+ +++ + L
Sbjct: 311 QHQRNVPLRLIEQLKTTINDL 331
>SB_57991| Best HMM Match : rve (HMM E-Value=1.1e-10)
Length = 314
Score = 27.9 bits (59), Expect = 8.1
Identities = 34/121 (28%), Positives = 47/121 (38%), Gaps = 3/121 (2%)
Frame = +3
Query: 228 GRFLLHL-GNFILASSWVAARSSCHQLEQLDAMLDKELALEGRAYGNDALVADEPLPLAN 404
G F HL G A S RS + E DA+LD E + R DEP+ N
Sbjct: 127 GGFFEHLVGVMKNALSKAVGRSLLNYCELEDALLDVETVMNNRPLVYQGEEFDEPVITPN 186
Query: 405 AHALHGVP-PMLSSVLPETSQPSS-SRPSLFKDDALNMPSPK*TKTNCRKLTTIRMTHQT 578
L G P P+L L + S + +R F + + T+ R L + H+
Sbjct: 187 L-LLRGRPVPILEEDLEKLSDAGNVTRRMRFIQHSKEDLKKRFTREYVRSLEERQQKHEE 245
Query: 579 R 581
R
Sbjct: 246 R 246
>SB_45156| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 397
Score = 27.9 bits (59), Expect = 8.1
Identities = 34/121 (28%), Positives = 47/121 (38%), Gaps = 3/121 (2%)
Frame = +3
Query: 228 GRFLLHL-GNFILASSWVAARSSCHQLEQLDAMLDKELALEGRAYGNDALVADEPLPLAN 404
G F HL G A S RS + E DA+LD E + R DEP+ N
Sbjct: 168 GGFFEHLVGVMKNALSKAVGRSLLNYCELEDALLDVETVMNNRPLVYQGEEFDEPVITPN 227
Query: 405 AHALHGVP-PMLSSVLPETSQPSS-SRPSLFKDDALNMPSPK*TKTNCRKLTTIRMTHQT 578
L G P P+L L + S + +R F + + T+ R L + H+
Sbjct: 228 L-LLRGRPVPILEEDLEKLSDAGNVTRRMRFIQHSKEDLKKRFTREYVRSLEERQQKHEE 286
Query: 579 R 581
R
Sbjct: 287 R 287
>SB_31796| Best HMM Match : SAP (HMM E-Value=3.5e-10)
Length = 1029
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = +1
Query: 67 VVMEKEHQPDSMATITMKPEYPPSEVYSTSEPPPAYRHRVSTSVQIA 207
V++ + P +I +PE P + ++S PP +V++S Q +
Sbjct: 514 VMLSTQQMPSPNTSIKQEPESPNTCIFSQQPPPQPAIKKVASSPQFS 560
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,927,123
Number of Sequences: 59808
Number of extensions: 436188
Number of successful extensions: 1273
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1267
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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