Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060741.seq
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032637-13|CAA21615.1|  709|Caenorhabditis elegans Hypothetical...    29   3.1  
Z73906-6|CAA98113.1|  824|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z49074-2|CAE48829.1|  807|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z49073-9|CAE48845.1|  807|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U41746-9|AAA83334.3|  559|Caenorhabditis elegans Groundhog (hedg...    28   7.2  
L23649-3|AAA27909.2|  601|Caenorhabditis elegans Tyrosinase prot...    28   7.2  
Z49969-3|CAA90267.1|  792|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AC084158-36|AAK68577.1| 1219|Caenorhabditis elegans Hypothetical...    27   9.5  

>AL032637-13|CAA21615.1|  709|Caenorhabditis elegans Hypothetical
           protein Y43F8C.14 protein.
          Length = 709

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +1

Query: 67  VVMEKEHQPDSMATITMKPEY--PPSEVYSTSEPPPAYRHRVSTSV 198
           +V++K   P ++AT T KP    PP      SEPPPA++    +S+
Sbjct: 275 IVVKKLQAPIALATSTPKPAMCRPPKH----SEPPPAFQDSFVSSI 316


>Z73906-6|CAA98113.1|  824|Caenorhabditis elegans Hypothetical
           protein D2030.6 protein.
          Length = 824

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +3

Query: 357 YGNDALVADEPLPLANAHALH-GVPPMLSSVLPETSQPSSSRPSLFKD 497
           YG +  V D+P+ ++       G PP +S ++PE   P+     + KD
Sbjct: 292 YGIEITVDDQPIIISEGKPKQPGEPPQVSYIVPELCFPTGLTDEMRKD 339


>Z49074-2|CAE48829.1|  807|Caenorhabditis elegans Hypothetical
           protein ZK970.1b protein.
          Length = 807

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
 Frame = +3

Query: 324 LDKELALEGRAYGN-DALVADEPLPL---ANAHALHGVPPMLSSVLPETSQPSSSR 479
           L + L+ E R+Y + + L+  E  P+   +N  +L       SS+L +T QPSSSR
Sbjct: 8   LQRSLSHEMRSYSSLNPLLPSEDTPIQSFSNGVSLEEGKQASSSLLRDTGQPSSSR 63


>Z49073-9|CAE48845.1|  807|Caenorhabditis elegans Hypothetical
           protein ZK970.1b protein.
          Length = 807

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
 Frame = +3

Query: 324 LDKELALEGRAYGN-DALVADEPLPL---ANAHALHGVPPMLSSVLPETSQPSSSR 479
           L + L+ E R+Y + + L+  E  P+   +N  +L       SS+L +T QPSSSR
Sbjct: 8   LQRSLSHEMRSYSSLNPLLPSEDTPIQSFSNGVSLEEGKQASSSLLRDTGQPSSSR 63


>U41746-9|AAA83334.3|  559|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 6 protein.
          Length = 559

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
 Frame = +3

Query: 393 PLANAHA-LHGVPPMLSSVLPETSQPSSSRPSLFKDDALNMPSPK*TKTNCRKLTTIRMT 569
           PLA   A L   PP  +S  P T  P++ R +  +      P P   +T   K TT   T
Sbjct: 326 PLATTRAPLPPSPPPRTSKRPVTQAPTTPRATTTRRPTTTTPRPTPRRTRRPKTTTAAPT 385

Query: 570 HQT 578
             T
Sbjct: 386 TTT 388


>L23649-3|AAA27909.2|  601|Caenorhabditis elegans Tyrosinase protein
           1 protein.
          Length = 601

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -1

Query: 59  CLSKFIYCSSLGNAHCVS 6
           C S++++C + GN HCV+
Sbjct: 393 CGSQYLFCDTRGNPHCVA 410


>Z49969-3|CAA90267.1|  792|Caenorhabditis elegans Hypothetical
           protein W01C9.3 protein.
          Length = 792

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
 Frame = +3

Query: 351 RAYGNDALVADEPLPLANAHALHGVPPMLSSVL---PETSQPSS-SRPSLFKDDALNMPS 518
           + Y ND  +   P P     +L  +PP  S  +   P  S PSS  R +  K+   ++  
Sbjct: 111 KVYSNDPRLVSIPRPAGTIPSLGSMPPSRSGSIITGPNPSPPSSQKRKNKNKESKSSLNK 170

Query: 519 PK 524
           PK
Sbjct: 171 PK 172


>AC084158-36|AAK68577.1| 1219|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.31 protein.
          Length = 1219

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 198 PDREDCSTNSGRFLLHLGNFILAS 269
           P+ E C T   +FL H+ NF L S
Sbjct: 556 PEDEGCLTQQNQFLAHILNFFLIS 579


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,358,327
Number of Sequences: 27780
Number of extensions: 325327
Number of successful extensions: 1138
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1136
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)