Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060740.seq
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   116   2e-27
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   116   2e-27
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    26   4.4  
SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces ...    26   5.8  
SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra...    26   5.8  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    25   7.7  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  116 bits (280), Expect = 2e-27
 Identities = 55/97 (56%), Positives = 60/97 (61%)
 Frame = +1

Query: 241 EQGGCHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXX 420
           E+ G HQTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH  
Sbjct: 56  EKAG-HQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVK 114

Query: 421 XXXXXXXXXXXXXXXXXXXXXXXQARGHIMKRFPSFP 531
                                   ARGH ++  P  P
Sbjct: 115 VNQNEKRYAIASAVAASGVPSLLLARGHRIEEIPEVP 151



 Score = 75.4 bits (177), Expect = 7e-15
 Identities = 34/56 (60%), Positives = 45/56 (80%)
 Frame = +3

Query: 510 EKIPELPLVVADKVQEXNKTKQAVIFLRRLKAWSDILKVYXSQRLRAGKGKMRNRR 677
           E+IPE+PLVV D VQ   KTK+AV  L+ +KA+ D++KV  S++LRAGKGK+RNRR
Sbjct: 145 EEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVIKVANSRKLRAGKGKLRNRR 200



 Score = 71.3 bits (167), Expect = 1e-13
 Identities = 33/59 (55%), Positives = 43/59 (72%)
 Frame = +2

Query: 77  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEA 253
           ++ ARP VS+Y+ K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++A
Sbjct: 1   MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKA 58


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  116 bits (280), Expect = 2e-27
 Identities = 55/97 (56%), Positives = 60/97 (61%)
 Frame = +1

Query: 241 EQGGCHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXX 420
           E+ G HQTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH  
Sbjct: 56  EKAG-HQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVK 114

Query: 421 XXXXXXXXXXXXXXXXXXXXXXXQARGHIMKRFPSFP 531
                                   ARGH ++  P  P
Sbjct: 115 VNQNEKRYAISSAVAASGVPSLLLARGHRIEEIPEVP 151



 Score = 74.9 bits (176), Expect = 1e-14
 Identities = 34/56 (60%), Positives = 45/56 (80%)
 Frame = +3

Query: 510 EKIPELPLVVADKVQEXNKTKQAVIFLRRLKAWSDILKVYXSQRLRAGKGKMRNRR 677
           E+IPE+PLVV D VQ   KTK+AV  L+ +KA+ D++KV  S++LRAGKGK+RNRR
Sbjct: 145 EEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVVKVANSRKLRAGKGKLRNRR 200



 Score = 72.1 bits (169), Expect = 7e-14
 Identities = 34/59 (57%), Positives = 43/59 (72%)
 Frame = +2

Query: 77  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEA 253
           ++ ARP VS+YS K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++A
Sbjct: 1   MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKA 58


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 138 APCTVSLFSEYTDTKGRATDRLISLL 61
           A C V ++SEYT   G ++  L++L+
Sbjct: 490 ADCVVKIWSEYTKNTGESSPVLVALV 515


>SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = -3

Query: 522 RESFHNVSSSLNERWDAGSSNGCRQGRSPLSEVDATVPTPP 400
           R+S   V+   N  W    + GC  G   L  + A +  PP
Sbjct: 178 RDSTRQVTIVPNRHWGGNGAIGCGVGHGVLHRLPAPLSGPP 218


>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
           3-phosphatidyltransferase Pis1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
 Frame = -1

Query: 95  KVG-LPIDSFRYFSEAIPLKY-TLIAVI 18
           K+G LP+ SF Y +  +PL Y TL+AV+
Sbjct: 186 KLGYLPVPSFIYSTGELPLSYPTLLAVL 213


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
 Frame = +2

Query: 77  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPI--RPDLVNDVHVSMSKNSRQPYCVSKE 250
           L + R LV     K ET+  +  P+  +  A I  RP L+ + ++S + +  +    +  
Sbjct: 753 LELIRELVEF--SKEETMATSQSPIRTLLSACINLRPFLLQEQYISFNMDFAEFLIDTNA 810

Query: 251 AVTKPVLNHGVLDVLSPEF 307
           ++   V+N  VLD L   F
Sbjct: 811 SIKGSVVNTCVLDFLYKSF 829


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,509,680
Number of Sequences: 5004
Number of extensions: 47005
Number of successful extensions: 129
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)