Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060740.seq
(680 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 122 3e-28
07_01_0578 + 4295386-4296489,4297394-4297507 119 2e-27
10_02_0199 + 6668902-6669293,6669825-6669882 35 0.052
07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988 30 1.5
03_01_0520 - 3900387-3900613,3900812-3900853,3902092-3902210,390... 30 2.0
01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149 30 2.0
12_01_0073 + 613316-613447,613611-613802,614067-614232,614460-61... 29 2.6
06_03_0243 + 18629793-18630047,18630362-18630442,18631911-186323... 29 2.6
07_03_0329 + 16840051-16840917,16840999-16841342,16841444-168415... 29 4.5
07_01_0524 + 3892340-3894625,3894995-3895109,3895204-3895298,389... 29 4.5
07_01_1032 - 8947594-8947769,8947885-8948601,8948973-8949049,894... 28 6.0
10_01_0359 + 3956527-3956616,3957623-3957818,3958102-3959418,395... 28 7.9
06_01_0010 - 151694-151951,152433-152489,152683-152774,153432-15... 28 7.9
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 122 bits (293), Expect = 3e-28
Identities = 56/92 (60%), Positives = 60/92 (65%)
Frame = +1
Query: 256 HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXX 435
HQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWH
Sbjct: 63 HQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRRVNIRL 122
Query: 436 XXXXXXXXXXXXXXXXXXQARGHIMKRFPSFP 531
ARGH ++ P FP
Sbjct: 123 RRIAVASALAATAVPSLVLARGHRIEGVPEFP 154
Score = 60.5 bits (140), Expect = 1e-09
Identities = 27/56 (48%), Positives = 39/56 (69%)
Frame = +3
Query: 510 EKIPELPLVVADKVQEXNKTKQAVIFLRRLKAWSDILKVYXSQRLRAGKGKMRNRR 677
E +PE PLVV+D ++ KT Q++ L+++ A++D K S +RAGKGKMRNRR
Sbjct: 148 EGVPEFPLVVSDSIESIEKTAQSIKVLKQIGAYADAEKTKDSVAIRAGKGKMRNRR 203
Score = 52.0 bits (119), Expect = 4e-07
Identities = 28/59 (47%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Frame = +2
Query: 80 SVARPLVSVYS-EKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEA 253
+ ARPLVSV + E A +P V +APIRPD+V H +S N RQPY VS+ A
Sbjct: 3 AAARPLVSVKALEGDMATDSAGIQMPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRA 61
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 119 bits (287), Expect = 2e-27
Identities = 54/92 (58%), Positives = 59/92 (64%)
Frame = +1
Query: 256 HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXX 435
HQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WR+WH
Sbjct: 64 HQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRKWHRRVNVHL 123
Query: 436 XXXXXXXXXXXXXXXXXXQARGHIMKRFPSFP 531
ARGH ++ P P
Sbjct: 124 RRVAVASALAATSVPSLVLARGHRIETVPELP 155
Score = 60.1 bits (139), Expect = 2e-09
Identities = 27/56 (48%), Positives = 38/56 (67%)
Frame = +3
Query: 510 EKIPELPLVVADKVQEXNKTKQAVIFLRRLKAWSDILKVYXSQRLRAGKGKMRNRR 677
E +PELPLV++D + KT QA+ L+++ A++D K S +R GKGKMRNRR
Sbjct: 149 ETVPELPLVISDSAESIEKTSQAIKILKQVGAYADAEKAKDSVGIRPGKGKMRNRR 204
Score = 50.0 bits (114), Expect = 2e-06
Identities = 27/57 (47%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Frame = +2
Query: 89 RPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEA 253
RPLVSV + + + T ++ L VF+AP+RPD+V VH +S N RQPY VS+ A
Sbjct: 6 RPLVSVKALEGDMATDNSSSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRA 62
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 35.1 bits (77), Expect = 0.052
Identities = 21/47 (44%), Positives = 23/47 (48%)
Frame = +1
Query: 238 REQGGCHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 378
RE GG A+SW TGRA A + R R GG R A N G R
Sbjct: 30 REGGG----GAQSWATGRAAAELGRGRKGGRRRGLAQAAANSGEGNR 72
>07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988
Length = 292
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/52 (36%), Positives = 22/52 (42%)
Frame = +1
Query: 52 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRVQGAHPSGPGQ*CSRF 207
ASL N + P+F V G SQA V + GAH G Q C F
Sbjct: 125 ASLALANSDLPPPSFDVANLTASFAAKGLSQADMVALSGAHTVGQAQ-CQNF 175
>03_01_0520 -
3900387-3900613,3900812-3900853,3902092-3902210,
3903633-3903712,3903829-3903856,3904151-3904272,
3904714-3904857,3904897-3906327
Length = 730
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -2
Query: 373 HHDTCYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQH 266
HH + H + YE+ + H + RQ QY QH
Sbjct: 150 HHQQYQQHHHQQQYEHQNRIHFQHHRQQQQYQQHQH 185
>01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149
Length = 248
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -2
Query: 337 TYEYHH-HGHAEFGRQHVQYPMIQHWFGDSLLAHAVGLPRVLGH 209
T+++HH HGH FGR H +P H G ++ + G P H
Sbjct: 144 THDHHHGHGHHLFGRDH--WPASHHPAG-GMVNYGGGAPYYAAH 184
>12_01_0073 +
613316-613447,613611-613802,614067-614232,614460-614845
Length = 291
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +1
Query: 52 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRVQGAHPSGPGQ*CSRF 207
ASL N I +PTF +G + G S + + GAH G + C F
Sbjct: 126 ASLDTANNDIPAPTFDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176
>06_03_0243 +
18629793-18630047,18630362-18630442,18631911-18632305,
18632471-18632926,18633156-18633247,18633528-18633683,
18635657-18636057
Length = 611
Score = 29.5 bits (63), Expect = 2.6
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
Frame = +1
Query: 130 AGCSQAPPVRVQGAHPSGPGQ*CSRFYVQELEAALLREQGGCHQTSAESWGTGRAVARIP 309
+G ++A + + P GP ++ +++L A RE + +A + T +A +
Sbjct: 448 SGYTRAATLNLPSVIPIGPRN--TQENIKQLLAGGQRELVATGEAAATAAATAKATPPLA 505
Query: 310 R-VRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 408
R GG HR G+G G GG WRR
Sbjct: 506 RRTADGGAHR-GRGGGGAEADGGARRGRGGGWRR 538
>07_03_0329 +
16840051-16840917,16840999-16841342,16841444-16841574,
16841671-16841792,16841877-16841983,16842104-16842236,
16842342-16842458,16842560-16842667,16842716-16842742,
16842759-16842830,16843462-16843584,16843671-16843833,
16844140-16844264,16844355-16844489,16844574-16844677,
16844772-16844834,16844930-16844993,16845186-16845318,
16845414-16845487,16845603-16845697,16845799-16845830,
16846201-16846355
Length = 1097
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +1
Query: 247 GGCHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGN 360
GG H +G GR RGGG R G+G G+
Sbjct: 169 GGYHGDGEAGYGRGRGGRDYDGGRGGGGRRGGRGGGGS 206
>07_01_0524 +
3892340-3894625,3894995-3895109,3895204-3895298,
3895929-3896167,3896524-3896610,3896967-3897066,
3897908-3898115,3898224-3899422
Length = 1442
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Frame = +1
Query: 241 EQGGCHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCR---GGRMFAPTKP-WR 405
E GG ++ G + R+R H G G+ G++ + GG+M P P WR
Sbjct: 74 EGGGSDKSKGSEVGKSVLQPDVKRIRTEAAHGGGSGSGGSVSKDGTGGKMLRPGFPKWR 132
>07_01_1032 -
8947594-8947769,8947885-8948601,8948973-8949049,
8949264-8949655,8949746-8950002,8950234-8950921
Length = 768
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = -3
Query: 531 REARESFHNVSSSLNERWDAGSSNGCRQGRSPLSEVDATVPTP 403
R A SF+++++ + + D SN C + +E DA VP+P
Sbjct: 556 RLADLSFYDMNNQIKDWMDNAWSNACPELDEDSTESDAPVPSP 598
>10_01_0359 +
3956527-3956616,3957623-3957818,3958102-3959418,
3959482-3960445,3960588-3960648,3961500-3961946
Length = 1024
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -2
Query: 394 SWGRTYVHHDTCYRRHPDRTYEYHH 320
SWGR H D RR P R+ +HH
Sbjct: 303 SWGRD--HADNRLRRSPSRSSNFHH 325
>06_01_0010 -
151694-151951,152433-152489,152683-152774,153432-153531,
153585-154211,154300-154638,154740-154991,155083-155556
Length = 732
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -3
Query: 540 LQPREARESFHNVSSSLNERWDAGSSNGCRQGRS 439
++PRE ++ V S+ NE WD ++G G +
Sbjct: 673 VEPRERGDNEQRVVSAYNEAWDVAGADGRAGGEA 706
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,430,716
Number of Sequences: 37544
Number of extensions: 411307
Number of successful extensions: 1590
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1583
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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