Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060740.seq
         (680 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)               125   4e-29
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)                     33   0.16 
SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.49 
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)                   31   0.65 
SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)              31   0.86 
SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)               31   1.1  
SB_10758| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)            29   3.5  
SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)                  29   3.5  
SB_25030| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8)                     28   6.1  
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_17110| Best HMM Match : PCI (HMM E-Value=2.1e-26)                   28   6.1  
SB_8252| Best HMM Match : rve (HMM E-Value=0.13)                       28   6.1  
SB_995| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   6.1  
SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08)                 28   8.0  
SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29)           28   8.0  
SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
          Length = 299

 Score =  125 bits (301), Expect = 4e-29
 Identities = 66/144 (45%), Positives = 77/144 (53%)
 Frame = +1

Query: 100 VGVFREE*DGAGCSQAPPVRVQGAHPSGPGQ*CSRFYVQELEAALLREQGGCHQTSAESW 279
           + VF E  + AG +  P V      P       S     + +   + +  G HQTSAESW
Sbjct: 6   ITVFNENGESAGQTTLPAVFKAPIRPDLVNFVHSNIAKNKRQPYAVNKLAG-HQTSAESW 64

Query: 280 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXX 459
           GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK WR+WH               
Sbjct: 65  GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRKWHTKVNVQQRRFAVCSA 124

Query: 460 XXXXXXXXXXQARGHIMKRFPSFP 531
                      ARGH +++    P
Sbjct: 125 LAASALPALIMARGHRIEKIAEVP 148



 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 28/56 (50%), Positives = 40/56 (71%)
 Frame = +3

Query: 510 EKIPELPLVVADKVQEXNKTKQAVIFLRRLKAWSDILKVYXSQRLRAGKGKMRNRR 677
           EKI E+PLV++D ++   KT  AV  L+ + A+ D+ K   S+++RAGKGKMRNRR
Sbjct: 142 EKIAEVPLVISDAIESVTKTSAAVKLLKAVNAYEDVEKCIDSKKIRAGKGKMRNRR 197


>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
          Length = 612

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -2

Query: 373 HHDTCYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQHWF 260
           HH  CY  H    Y Y+ H H  + R H  YP  +H++
Sbjct: 20  HHYCCYCHH---RYCYYRHHHYCWYRHHYHYPCYRHYY 54


>SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 358 YRRHPDRTYEYHHHGHAEFGRQHVQYPMIQH 266
           Y +HP  T+ YH H      R H Q+P + H
Sbjct: 232 YHQHPQVTHRYHQHPQVTH-RYHQQHPQVTH 261



 Score = 31.5 bits (68), Expect = 0.65
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 358 YRRHPDRTYEYHHHGHAEFGRQHVQYPMIQH 266
           Y +HP  T+ YHH  H +   ++ Q+P + H
Sbjct: 413 YHQHPQLTHRYHHQ-HPQVIHRYHQHPQVTH 442


>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
          Length = 453

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 373 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 290
           HH     RH  R + +HHH H E+ R+H
Sbjct: 325 HHQRHRHRHRHR-HRHHHHHHHEYNRRH 351


>SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)
          Length = 628

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 19/54 (35%), Positives = 22/54 (40%)
 Frame = +1

Query: 247 GGCHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 408
           GG  Q     WG G+    + R  GGG  R   G +G M  GG    P   W R
Sbjct: 14  GGWGQGPGGGWGRGQG-GGMGRGPGGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 66


>SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)
          Length = 1098

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/54 (35%), Positives = 22/54 (40%)
 Frame = +1

Query: 247 GGCHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 408
           GG  Q     WG G+    + R  GGG  R   G +G M  GG    P   W R
Sbjct: 258 GGWGQGPGGGWGRGQGRG-MGRGPGGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 310


>SB_10758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 845

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
 Frame = +2

Query: 62  SSEMSLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPY-- 235
           S +M L   R  +  Y+E    ++   + LP V  AP+  D+V +V  S  K S + Y  
Sbjct: 475 SPQMPLDFPRSFLEDYAEACANLK---QSLPQVHLAPLASDIVREVESSEVKLSLKFYVS 531

Query: 236 --CVSKEAVTK 262
             C S EAV K
Sbjct: 532 ENCPSVEAVVK 542


>SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -2

Query: 382 TYVHHDTCYRRHPDRTYEYHHHGHA 308
           TY H DT  R+HPD     H   HA
Sbjct: 123 TYTHQDTQMRKHPDTQIYVHAPRHA 147


>SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)
          Length = 694

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 9/35 (25%), Positives = 14/35 (40%)
 Frame = -2

Query: 385 RTYVHHDTCYRRHPDRTYEYHHHGHAEFGRQHVQY 281
           R + HH   +  H    + +HHH H      H  +
Sbjct: 209 RHHQHHQHHHHHHHQHNHHHHHHNHHHHHHHHYHH 243


>SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)
          Length = 1080

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 262  TSAESWGTGRAVARIPR-VRGGGTHRSGQGAFGNMCRGGR 378
            T +E   +G ++ R PR  RGGG    G G  G   RGGR
Sbjct: 983  TPSEPSSSGSSIVRRPRRRRGGGGGGGGGGGGGGGRRGGR 1022


>SB_25030| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -2

Query: 337 TYEYHHHGHAEFGRQHVQYPMI-QHWFGDSLLAHAVGLP-RVLGHRNVN 197
           +Y++HHHG  E   Q V    I + W    L +H    P RV+G   ++
Sbjct: 21  SYQWHHHGTGETDDQPVTTTRITRTWVNRRLNSHRTIKPSRVIGRAQIH 69


>SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8)
          Length = 193

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 373 HHDTCYRRHPDRTYEYHHH 317
           HH   YR H  + Y +HHH
Sbjct: 96  HHHQHYRHHRHQHYRHHHH 114


>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3486

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 153  GRGLAAPCTVSLFSEYTDTKGRATDRLI 70
            G+GL   C+V+L S Y  T+G+   RL+
Sbjct: 3163 GKGLTTWCSVNLDSVYLSTEGKEVYRLV 3190


>SB_17110| Best HMM Match : PCI (HMM E-Value=2.1e-26)
          Length = 451

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 504 HYEKIPELPLVVADKVQEXNKTKQAVIFL 590
           HY+ I E P++  DK ++    K  V+FL
Sbjct: 244 HYKAIYETPIITEDKEKKHQALKHVVLFL 272


>SB_8252| Best HMM Match : rve (HMM E-Value=0.13)
          Length = 264

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 379 YVHHDTCYRRHPDRTYEYHHHGH 311
           Y HH   +RR   R + +HHH H
Sbjct: 233 YHHHHHHHRRRRRRRHHHHHHHH 255


>SB_995| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 83

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 504 HYEKIPELPLVVADKVQEXNKTKQAVIFL 590
           HY+ I E P++  DK ++    K  V+FL
Sbjct: 26  HYKAIYETPIITEDKEKKHQALKHVVLFL 54


>SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08)
          Length = 839

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 373 HHDTCYRRHPDRTYEYHHH 317
           HH   + RH  R + YHHH
Sbjct: 570 HHHLHHHRHHHRHHHYHHH 588


>SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29)
          Length = 1779

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 373 HHDTCYRRHPDRTYEYHHHGH 311
           HH   + RH DR + + HH H
Sbjct: 340 HHRNKHYRHHDRNHHHRHHHH 360


>SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 736

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -2

Query: 361 CYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQH 266
           CY +  +  + YHHH H      H Q+    H
Sbjct: 246 CYHKLKNPRHRYHHHHHHHHQHNHHQHHHHHH 277


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,877,595
Number of Sequences: 59808
Number of extensions: 408116
Number of successful extensions: 1230
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1177
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)