Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060740.seq
         (680 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   112   2e-25
Z78061-1|CAB01494.1|  658|Caenorhabditis elegans Hypothetical pr...    29   4.1  
U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical pr...    29   4.1  
AL132949-31|CAB61110.3|  297|Caenorhabditis elegans Hypothetical...    28   5.4  
U55366-2|AAA97981.1|  156|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  112 bits (270), Expect = 2e-25
 Identities = 53/91 (58%), Positives = 57/91 (62%)
 Frame = +1

Query: 259 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXX 438
           Q SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAP K +RRWH        
Sbjct: 60  QHSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQK 119

Query: 439 XXXXXXXXXXXXXXXXXQARGHIMKRFPSFP 531
                            QARGH++ +    P
Sbjct: 120 RYAVSSAIAASGIPALLQARGHVIDQVAEVP 150



 Score = 77.4 bits (182), Expect = 9e-15
 Identities = 34/56 (60%), Positives = 46/56 (82%)
 Frame = +3

Query: 510 EKIPELPLVVADKVQEXNKTKQAVIFLRRLKAWSDILKVYXSQRLRAGKGKMRNRR 677
           +++ E+PLVV+DKV+   KTK+AV+FLRR   W+DI KVY S+R RAGKGK+RNR+
Sbjct: 144 DQVAEVPLVVSDKVESFRKTKEAVVFLRRSHLWADIEKVYNSKRNRAGKGKLRNRQ 199



 Score = 54.0 bits (124), Expect = 9e-08
 Identities = 27/56 (48%), Positives = 37/56 (66%)
 Frame = +2

Query: 86  ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEA 253
           ARPLV+VY EK E  Q   + LP VF+ PIRPDLV+ +   + +N RQ + V+ +A
Sbjct: 3   ARPLVTVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKA 57


>Z78061-1|CAB01494.1|  658|Caenorhabditis elegans Hypothetical
           protein C48G7.1 protein.
          Length = 658

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = +2

Query: 170 PIRPDLVNDVHVSMSKNSRQPYCVSKEAVTKPVLNHGVLDVLS 298
           P + D ++DVH+S S    Q     K     P L H     LS
Sbjct: 205 PSKHDRLDDVHISRSDRRSQSVRSHKSVTASPKLGHSTSSTLS 247


>U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical
           protein F53A9.9 protein.
          Length = 147

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 373 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 290
           HHD  +++H  + ++ HHHGH   G  H
Sbjct: 120 HHDGHHKKHGRKEHD-HHHGH-HHGHHH 145


>AL132949-31|CAB61110.3|  297|Caenorhabditis elegans Hypothetical
           protein Y53F4B.36 protein.
          Length = 297

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 17/79 (21%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
 Frame = +2

Query: 71  MSLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV-SK 247
           MS++V  P +S        V    + + F++  P    ++ D H+   + +    CV S 
Sbjct: 182 MSMAVTSPYLSKLDRLPIVVSACKRAMCFIYDRPTNSIILLDTHMHFKRRAVSVLCVASF 241

Query: 248 EAVTKPVLNHGVLDVLSPE 304
           E +T  +++  V +++ P+
Sbjct: 242 EEITDFIVS--VTEIVFPK 258


>U55366-2|AAA97981.1|  156|Caenorhabditis elegans Hypothetical
           protein F41F3.3 protein.
          Length = 156

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 22/77 (28%), Positives = 27/77 (35%)
 Frame = +1

Query: 127 GAGCSQAPPVRVQGAHPSGPGQ*CSRFYVQELEAALLREQGGCHQTSAESWGTGRAVARI 306
           G GC  APP         G G   +   +  L    L   GGC    A + G G      
Sbjct: 24  GGGCGCAPPPPPPSPCGCGGGGGLALPQLPPLSLPSLGGGGGCCPPPAPACGGGCGGGVA 83

Query: 307 PRVRGGGTHRSGQGAFG 357
           P   GGG  ++ Q   G
Sbjct: 84  PAPIGGGYAQAPQAPIG 100


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,224,277
Number of Sequences: 27780
Number of extensions: 287308
Number of successful extensions: 959
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)