Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060738.seq
         (673 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    28   0.061
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        23   3.0  
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    22   4.0  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   6.9  

>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 28.3 bits (60), Expect = 0.061
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -1

Query: 496 RTLGEVIDSWNFLRYLQKLIIRFES 422
           R LGE I++WN L   Q L+I F+S
Sbjct: 620 RILGETIETWNKLFGYQILLITFQS 644


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 365 DKAASPPGAPVHQYPVPVLPSPGWV 291
           DKA SP G  + + P+P + SP +V
Sbjct: 395 DKAPSPYGGQMFEAPIPNV-SPHYV 418


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = +2

Query: 290 EPTPETAGLGQDTGVRAHPEARPPCHSSDSSQ 385
           E   E    G + GVR  PE   P H  +  Q
Sbjct: 277 EEVAEIVEYGLERGVRVIPEFDAPAHVGEGWQ 308


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -3

Query: 197 PACPGDCFRPGRCVCRPPAG 138
           P C     RPGRC C+   G
Sbjct: 92  PTCDEPVHRPGRC-CKTCPG 110


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,831
Number of Sequences: 336
Number of extensions: 3326
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17489640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)