Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060738.seq
         (673 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT |Schizosa...    29   0.61 
SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 comple...    27   3.3  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    26   5.7  
SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac...    26   5.7  
SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2 |Schizo...    26   5.7  
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    25   7.5  

>SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 29.1 bits (62), Expect = 0.61
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +3

Query: 561 SGLSLRYIALSAISLSICGQELVQQWKLLVFVVHYMI 671
           + LSL Y+ +S + L++  +E +  WK L F+VH  I
Sbjct: 417 TNLSLSYLIISFLLLNL--KESIHVWKELYFIVHIYI 451


>SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 442

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -3

Query: 593 RQSNVAQTEPASIL*RGADWWFCTSMCIITFKQNIGRGH 477
           +Q  + QT  A+++  GAD    T   ++TF+  +GR H
Sbjct: 196 KQIRLCQTIQANVISSGADISRATMAELVTFRYYLGRCH 234


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 383 G*NPKSDKAASPPGAPVHQYPVPVLPS 303
           G NP +  + S   +PVH YP    PS
Sbjct: 869 GLNPNARHSLSRANSPVHHYPFATPPS 895


>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 585 ALSAISLSICGQELVQQWKLLV 650
           AL A S+ I G++++  WKLLV
Sbjct: 429 ALKASSVKIQGRDILATWKLLV 450


>SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 472

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +2

Query: 146 GADTHIYLV*SSRRGTQASRLPSILRSTQTSLRPG-LPSAGPAILP 280
           G DTH+ LV  + +G   +R+  IL     S     +P    A++P
Sbjct: 344 GTDTHLVLVDLTDKGVDGARVERILELVNISANKNTVPGDKSALIP 389


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +1

Query: 169 GLKQSPGHAGVKAAIDFEKYTDELATW 249
           G+ ++PG   +K  ++F+  + + ATW
Sbjct: 71  GILKTPGTLQIKKTVNFKDISKDAATW 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,610,821
Number of Sequences: 5004
Number of extensions: 51608
Number of successful extensions: 127
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)