Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060738.seq
(673 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0026 - 25024807-25025300,25025432-25025495,25025567-250256... 31 0.10
06_03_1028 - 27004229-27004566,27005554-27005772,27006254-270063... 33 0.21
01_06_0116 - 26595570-26596607,26596964-26598353,26599386-265999... 31 1.1
06_01_0874 - 6702059-6702733,6703146-6703521,6703677-6703770,670... 29 2.6
02_05_0092 + 25749070-25750638 29 4.5
12_02_0954 - 24757417-24758214 28 7.8
12_02_0305 - 17235832-17236379,17237345-17237444 28 7.8
10_08_0965 + 21915842-21916906 28 7.8
02_04_0327 - 22063453-22063725,22064093-22064404,22064724-220648... 28 7.8
01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149 28 7.8
>05_06_0026 -
25024807-25025300,25025432-25025495,25025567-25025662,
25025719-25025929,25026616-25026690,25026820-25027037
Length = 385
Score = 31.1 bits (67), Expect(2) = 0.10
Identities = 25/61 (40%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = -3
Query: 374 PKSDKAASPPGAPVHQYPVPVLPSPGW-VLC*RVG*LDPHLVAQVASSSVYFSKSMAALT 198
P S AA+PP PV Q PVP P P V L P VA V + + S + ALT
Sbjct: 10 PPSPVAAAPPPPPV-QVPVPPPPPPPLPPAAAAVEPLPPQPVAVVVAEAEPCSMNQLALT 68
Query: 197 P 195
P
Sbjct: 69 P 69
Score = 21.8 bits (44), Expect(2) = 0.10
Identities = 10/34 (29%), Positives = 15/34 (44%)
Frame = -3
Query: 221 SKSMAALTPACPGDCFRPGRCVCRPPAGSARYAE 120
S+ + P G + +C C+P A YAE
Sbjct: 93 SRCLKLYCPCFAGGGYCSEKCGCQPCFNKALYAE 126
>06_03_1028 -
27004229-27004566,27005554-27005772,27006254-27006390,
27007172-27007509
Length = 343
Score = 33.1 bits (72), Expect = 0.21
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Frame = +2
Query: 188 GTQASRLPSILRSTQTSLRPGLPSAGPAILPF-----NTEPTPETAGLGQDTGVRAHPEA 352
G Q S + S Q S P +PS G + +PF + P+ DTG P+
Sbjct: 266 GHQTSSIIQFTNSNQNSTLPSVPSEGNSNVPFWVDGQHQAVEPQVFQFTMDTGNTVFPDL 325
Query: 353 RPPCHSSDSSQFGL 394
S +SS FGL
Sbjct: 326 ERIKPSYESSMFGL 339
>01_06_0116 -
26595570-26596607,26596964-26598353,26599386-26599923,
26600562-26601453
Length = 1285
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +2
Query: 266 PAILPFNTEPTPETAGLGQD-TGVRA-HPEARPPCHSSDSSQFGLLLHE 406
PA P+ EPTP ++ G +G HP PP H SD S F L LH+
Sbjct: 612 PAKAPYR-EPTPSSSSRGGHFSGTSPNHPLPPPPRHRSDDSSF-LGLHD 658
>06_01_0874 -
6702059-6702733,6703146-6703521,6703677-6703770,
6705455-6705833
Length = 507
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = -2
Query: 321 CPSPAVSGVGSVLKGRIAGPALGSPGRKLVCVLLKI 214
C + S G V +G +AG A GSPG K+ VLL +
Sbjct: 232 CAAKWASHRGGV-RGTLAGAAAGSPGEKVFNVLLAV 266
>02_05_0092 + 25749070-25750638
Length = 522
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 251 LPSAGPAILPFNTEPTPETAGLGQDTGVRAHPEARPP 361
+PSA PA+ P + ETA V H ++PP
Sbjct: 120 MPSANPAVAPVQIQMPSETAASVPAAPVPVHAPSQPP 156
>12_02_0954 - 24757417-24758214
Length = 265
Score = 27.9 bits (59), Expect = 7.8
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = -3
Query: 341 APVHQYPVPVLPSP 300
AP+HQ PVP+LP P
Sbjct: 3 APLHQSPVPLLPPP 16
>12_02_0305 - 17235832-17236379,17237345-17237444
Length = 215
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = -3
Query: 374 PKSDKAASPPGAPVHQYPVPVL-PSP 300
P S + ASPP V P PV+ PSP
Sbjct: 82 PPSPRRASPPSVSVEPTPAPVIAPSP 107
>10_08_0965 + 21915842-21916906
Length = 354
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Frame = -3
Query: 377 NPKSDKA---ASPPGAPVHQYPVPVLPSPGWVL 288
NP S A A P GA V YP+P LP+ +++
Sbjct: 198 NPNSAAAVASAPPEGAAVRAYPLPTLPNSEYLV 230
>02_04_0327 -
22063453-22063725,22064093-22064404,22064724-22064859,
22065901-22065974,22066084-22066221
Length = 310
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 221 RSTQTSLRPGLPSAGPAILPFNTEPTPETA 310
RS TS++ P+ GP+ + F EP +TA
Sbjct: 210 RSIHTSVKVSNPAGGPSNIMFGEEPAVKTA 239
>01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149
Length = 248
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/63 (26%), Positives = 26/63 (41%)
Frame = +2
Query: 194 QASRLPSILRSTQTSLRPGLPSAGPAILPFNTEPTPETAGLGQDTGVRAHPEARPPCHSS 373
+ R+P+I T + P P+ G A P P PE A + A P PP +
Sbjct: 65 KTKRVPTIFSHTDPAAPPPPPAEGEAAPPPADAPPPEEAPAAEPAPSEAAPP--PPAEAD 122
Query: 374 DSS 382
++
Sbjct: 123 QAA 125
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,847,038
Number of Sequences: 37544
Number of extensions: 416850
Number of successful extensions: 1468
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1467
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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