Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060738.seq
         (673 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023838-4|CAA19504.1|  218|Caenorhabditis elegans Hypothetical ...    30   1.3  
Z75533-3|CAA99822.1|  868|Caenorhabditis elegans Hypothetical pr...    28   5.3  

>AL023838-4|CAA19504.1|  218|Caenorhabditis elegans Hypothetical
           protein Y43C5A.4 protein.
          Length = 218

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = -3

Query: 377 NPKSDKAASPPGAPVHQYPVPVLPSP 300
           +PK D   +PPGAP     VPV PSP
Sbjct: 138 SPKKDDFFAPPGAPDPVPAVPVEPSP 163


>Z75533-3|CAA99822.1|  868|Caenorhabditis elegans Hypothetical
           protein C54G4.4 protein.
          Length = 868

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = -1

Query: 652 KTKSFHCCTSSCPHMLREIADRAM*RKLSPLRYYSGVQTGGSAHQCV 512
           ++KSF        + +R I+ R +  K SP+     ++TGG+ HQC+
Sbjct: 249 ESKSFWEVDLLGDYSIRSISMR-LGTKSSPIVSVEAIETGGAVHQCI 294


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,178,206
Number of Sequences: 27780
Number of extensions: 328618
Number of successful extensions: 908
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)