Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060738.seq
         (673 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    26   0.38 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    24   1.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.5  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   6.1  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   6.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   8.1  

>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 25.8 bits (54), Expect = 0.38
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -3

Query: 374 PKSDKAASPPGAPVHQYPVPVLPSPG 297
           P +D AAS PG     YP  VL  PG
Sbjct: 400 PVADVAASGPGLAFLVYPSAVLELPG 425


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -3

Query: 374 PKSDKAASPPGAPVHQYPVPVLPSPG 297
           P +D A S PG     YP  VL  PG
Sbjct: 347 PVADVAVSGPGLAFLVYPSAVLELPG 372


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 350 PPGAPVHQYPVPVLPSP 300
           PPGAP  Q P  ++ SP
Sbjct: 51  PPGAPPSQNPSQMMISP 67


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 341 APVHQYPVPVLPSPG 297
           AP  + P+P LP PG
Sbjct: 468 APCFEEPLPSLPLPG 482


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = -2

Query: 348 SGCARTPVSCPSPAVSGVGSVLKGRIAG---PALGSPGR 241
           +G + T  + P+P    VGS + G   G   P + + G+
Sbjct: 42  AGTSTTAAATPTPPSVPVGSAVAGTAGGALFPGMAAAGK 80


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 295  HPGDGRTGTGYWCTGAPGGEAALSLFG 375
            HPG+G +GT     G P   +A S  G
Sbjct: 1750 HPGNGHSGTMGPPVGHPTNASAHSRSG 1776


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +2

Query: 488 QCSV*MLLYTLMCRTTSLHPAIVSKRAQFALHCSVGYFPKHMRARTCAAMEAFSFCR 658
           QCS+ + +    C+   L   I    ++ A+    G  PK  +AR  AAM+  S  R
Sbjct: 109 QCSI-LRINRNRCQYCRLKKCIAVGMSRDAVR--FGRVPKREKARILAAMQQSSHSR 162


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,592
Number of Sequences: 438
Number of extensions: 4187
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)