Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060738.seq
         (673 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19840.1 68416.m02513 FF domain-containing protein / WW domai...    31   0.70 
At2g02070.1 68415.m00143 zinc finger (C2H2 type) family protein ...    31   0.70 
At4g17610.1 68417.m02633 tRNA/rRNA methyltransferase (SpoU) fami...    28   4.9  
At3g11710.1 68416.m01435 lysyl-tRNA synthetase, putative / lysin...    28   6.5  
At1g35440.1 68414.m04396 cyclin family protein similar to SP|O75...    27   8.6  
At1g15180.1 68414.m01815 MATE efflux family protein contains Pfa...    27   8.6  

>At3g19840.1 68416.m02513 FF domain-containing protein / WW
           domain-containing protein weak similarity to
           transcription factor CA150b [Mus musculus] GI:6329166;
           contains Pfam profiles PF01846: FF domain, PF00397: WW
           domain
          Length = 743

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
 Frame = +2

Query: 245 PGL---PSAGPAILPFNTEPTPETAGLGQDTGVRAHPEARPPCHSSDSSQFGLLL 400
           PGL   P A P   PF+T P P  +          HP   PP HS   +  G+ L
Sbjct: 16  PGLMTSPPAFPGSNPFSTTPRPGMSAGPAQMNPGIHPHMYPPYHSLPGTPQGMWL 70


>At2g02070.1 68415.m00143 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 602

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -3

Query: 374 PKSDKAASPPGAPVHQYPVPVLPSP 300
           P S  AA PP  P HQ P+P L +P
Sbjct: 25  PNSSAAAPPPPPPHHQAPLPPLEAP 49


>At4g17610.1 68417.m02633 tRNA/rRNA methyltransferase (SpoU) family
           protein similar to TAR RNA loop binding protein [Homo
           sapiens] GI:1184692; contains Pfam profile PF00588: SpoU
           rRNA Methylase (RNA methyltransferase, TrmH) family
          Length = 1850

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 3/32 (9%)
 Frame = +1

Query: 481 PLPMFC--LNVIIHIDVQNHQSAPRY-SIEAG 567
           P+P+ C  LN+I++   Q+HQ+AP+  S  AG
Sbjct: 193 PIPLSCHLLNLILNAAFQSHQAAPKVESFAAG 224


>At3g11710.1 68416.m01435 lysyl-tRNA synthetase, putative /
           lysine--tRNA ligase, putative similar to SP|Q43776
           Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase)
           {Lycopersicon esculentum}; contains Pfam profile
           PF00152: tRNA synthetases class II (D, K and N)
          Length = 626

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/29 (48%), Positives = 14/29 (48%)
 Frame = -2

Query: 396 NSPNWLESEE*QGGLASGCARTPVSCPSP 310
           N P  L SEE    L   CAR  V CP P
Sbjct: 443 NIPKDLASEEANKYLIDACARFDVKCPPP 471


>At1g35440.1 68414.m04396 cyclin family protein similar to SP|O75909
           Cyclin K {Homo sapiens}; contains Pfam profile PF00134:
           Cyclin, N-terminal domain
          Length = 247

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 251 AQVASSSVYFSKSMAALTPACPGD 180
           +Q+AS+++Y   SM  +T  C GD
Sbjct: 188 SQIASAAIYIGLSMCKMTLPCDGD 211


>At1g15180.1 68414.m01815 MATE efflux family protein contains Pfam
           profile PF01554: Uncharacterized membrane protein family
          Length = 482

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = +3

Query: 471 ESMTSPNVLFKCYYTH*CAEPPVCTPL*YRSGLSLRYIALSAISLSIC 614
           +SM +P ++  C+    C   P+C  L Y+SGL     AL A+S S C
Sbjct: 182 QSMITPLLITSCFVF--CLHVPLCWLLVYKSGLGNLGGAL-ALSFSNC 226


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,259,821
Number of Sequences: 28952
Number of extensions: 296332
Number of successful extensions: 918
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)