Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060737.seq
(685 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1919.03c |||AMP-activated protein kinase beta subunit |Schiz... 46 4e-06
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe... 29 0.83
SPAPB2B4.02 |grx5||monothiol glutaredoxin Grx5|Schizosaccharomyc... 27 1.9
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 27 1.9
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 27 3.3
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom... 27 3.3
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 26 4.4
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 26 4.4
SPCC61.05 |||S. pombe specific multicopy membrane protein family... 25 7.7
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch... 25 7.7
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c... 25 7.7
>SPCC1919.03c |||AMP-activated protein kinase beta subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 298
Score = 46.4 bits (105), Expect = 4e-06
Identities = 17/53 (32%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
Frame = +2
Query: 356 LPTVFKWEGGGKQVFISGTFTDW-ETIPMVKSHGDFVTIIDLPEGEHQYKYFL 511
+PT+ +W GGG+ V+++G+F+ W + I ++KS D+ ++ L G ++K+ +
Sbjct: 99 VPTIIRWRGGGEVVYVTGSFSRWKKKIQLLKSE-DYTVLLQLRPGTQRFKFLV 150
>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 28.7 bits (61), Expect = 0.83
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = -2
Query: 348 ISSTILLPSVRVFDLSRCSVYSISLSGTALVYKERHLLYYCHHLDYFDHRLA 193
+ S +LL + S+ +S++G LVY R L+ + ++ FDH L+
Sbjct: 806 VQSKMLLYNSNHISCPLSSIKGVSVNGKRLVYTSRALVEWALVVNEFDHALS 857
>SPAPB2B4.02 |grx5||monothiol glutaredoxin Grx5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 146
Score = 27.5 bits (58), Expect = 1.9
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 413 FTDWETIPMVKSHGDFVTIIDLPEGEHQ 496
F+DW TIP + +G+FV D+ H+
Sbjct: 89 FSDWPTIPQLYINGEFVGGSDILASMHK 116
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 27.5 bits (58), Expect = 1.9
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 119 SIFMPFFGLVTSGIPHLIFKWL 54
++ M FG +T IPHLI+ W+
Sbjct: 1492 TLLMLLFGTMTVWIPHLIYFWI 1513
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 26.6 bits (56), Expect = 3.3
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = -3
Query: 116 IFMPFFGLVTSGIPHLIFKWL 54
++M FG +T+ +PH I+ W+
Sbjct: 1335 MYMLLFGSITAWLPHYIYFWI 1355
>SPCC663.10 |||methyltransferase, DUF1613 family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 502
Score = 26.6 bits (56), Expect = 3.3
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +1
Query: 43 LHTYNHLKIKWGMPEVTNPKNG 108
+H KI W +P+ NPK+G
Sbjct: 397 VHDLTGAKISWALPKPRNPKHG 418
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
Frame = -3
Query: 95 LVTSGIPHLIFKWL--YVCRFV 36
L+T G+ +LIF+WL Y RFV
Sbjct: 176 LLTLGLAYLIFRWLPKYFIRFV 197
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = -3
Query: 158 WR*RSLIMIRRFVSIFMPFFGLVTSGIPHLIFKWLYVCRF 39
W RS + +S+F+ F G+ I W Y C+F
Sbjct: 984 WHYRSYVHGNSRISVFLESFSCPVPGLEEKIIMWSY-CKF 1022
>SPCC61.05 |||S. pombe specific multicopy membrane protein family
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 469
Score = 25.4 bits (53), Expect = 7.7
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = -2
Query: 387 PPPSHLKTVGNTLISSTILLPSVRVFDLSRC 295
PP S+ +T+ +TL++ ++ L + + L RC
Sbjct: 191 PPESYFRTIKSTLLAISMFLGFITLTWLLRC 221
>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 845
Score = 25.4 bits (53), Expect = 7.7
Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 2/90 (2%)
Frame = -2
Query: 429 VSQSVNVPEINTCFPPPSHLK-TVGNTLISSTILLPSVRVFDLSRCSVYSISLSGTALVY 253
+ +VP I FP PS+ K T+ + +P + D S + L T +
Sbjct: 442 LGSKASVPMI--LFPAPSNYKLTIEKPPFPCDLTIPHTAIND----SWLPMKLKETNAIS 495
Query: 252 KERHLLYYCHH-LDYFDHRLAFYQT*RLPL 166
R C + +F ++L FYQ+ LPL
Sbjct: 496 YYRKTCSSCKYPFQFFINKLPFYQSPSLPL 525
>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.4 bits (53), Expect = 7.7
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +2
Query: 413 FTDWETIPMVKSHGDFVTIIDL 478
F+DW T P + G+FV +D+
Sbjct: 207 FSDWPTFPQLYIKGEFVGGLDI 228
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,956,225
Number of Sequences: 5004
Number of extensions: 65758
Number of successful extensions: 164
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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