Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060737.seq
(685 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0744 + 35910512-35910569,35911145-35911325,35912332-359124... 46 2e-05
04_03_0807 - 19860041-19860132,19860248-19860347,19861101-198611... 45 6e-05
07_03_1739 - 29148685-29149017,29149564-29149726,29149844-291500... 43 3e-04
05_05_0310 - 23991461-23991652,23991780-23991965,23992813-239930... 42 3e-04
03_02_0815 + 11477618-11477845,11478206-11478337,11480227-114804... 42 5e-04
10_08_1042 - 22515298-22515354,22515614-22515709,22515806-225159... 29 3.4
04_04_0705 - 27406405-27406424,27406425-27409260 28 6.0
12_02_0869 - 23844378-23844689,23844924-23845233,23845322-238454... 28 7.9
07_03_1042 + 23487326-23487443,23487555-23487957,23488057-234883... 28 7.9
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132 28 7.9
>03_06_0744 +
35910512-35910569,35911145-35911325,35912332-35912419,
35912541-35912726,35913591-35913725,35913803-35913862,
35914609-35914698,35915384-35915515,35916039-35916183,
35916266-35916439,35916629-35916692,35916778-35916847,
35917328-35917445,35918258-35918280,35918398-35918499,
35919831-35920250,35920327-35920563
Length = 760
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Frame = +2
Query: 356 LPTVFKWEGGGKQVFISGTFTDW-ETIPMVKSHG---DFVTIIDLPEGEHQYKY 505
+PT F W GGK+V+++G+FT W E +PM G F I L G HQYK+
Sbjct: 59 VPTRFVWPYGGKRVYLTGSFTRWTEHLPMSPVEGCPTVFQAICSLSPGIHQYKF 112
>04_03_0807 -
19860041-19860132,19860248-19860347,19861101-19861170,
19861344-19861407,19862531-19862704,19862805-19862946,
19863413-19863544,19863616-19863705,19864093-19864152,
19864227-19864343,19864441-19864611,19866909-19866984,
19867156-19867223
Length = 451
Score = 44.8 bits (101), Expect = 6e-05
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +2
Query: 368 FKWEGGGKQVFISGTFTDWETIPMVKSHGDFVTIIDLPEGEHQYKYFL 511
F W GG++ G+FT W PM +F + DLP G +QY++ +
Sbjct: 6 FAWPYGGQRASFCGSFTGWRECPMGLVGAEFQVVFDLPPGVYQYRFLV 53
>07_03_1739 -
29148685-29149017,29149564-29149726,29149844-29150028,
29150708-29150977
Length = 316
Score = 42.7 bits (96), Expect = 3e-04
Identities = 17/55 (30%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Frame = +2
Query: 350 KVLPTVFKWEGGGKQVFISGTFTDWETIPMVKSHG-DFVTIIDLPEGEHQYKYFL 511
K++PT+ W GGK V+I G++ +W++ +V G D ++ L G ++Y++ +
Sbjct: 125 KLIPTLLVWTLGGKNVYIEGSWDNWKSKQLVHKCGKDHCVMLGLASGVYRYRFIV 179
>05_05_0310 -
23991461-23991652,23991780-23991965,23992813-23993094,
23993220-23993382,23993477-23993661,23994154-23994205,
23994292-23994392,23995244-23995417
Length = 444
Score = 42.3 bits (95), Expect = 3e-04
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +2
Query: 350 KVLPTVFKWEGGGKQVFISGTFTDWETIPMVKSHG-DFVTIIDLPEGEHQYK 502
K +PT+ W GG +VF+ G++ +W + +++ G D ++ LP G + Y+
Sbjct: 144 KGIPTLISWSQGGNEVFVEGSWDNWTSRRVLEKSGKDHTILLVLPSGVYHYR 195
>03_02_0815 +
11477618-11477845,11478206-11478337,11480227-11480408,
11480500-11480662,11481480-11481794
Length = 339
Score = 41.9 bits (94), Expect = 5e-04
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +2
Query: 350 KVLPTVFKWEGGGKQVFISGTFTDWET-IPMVKSHGDFVTIIDLPEGEHQYKY 505
K +P + W GGK V + G++ +W++ PM KS D ++ LP G ++Y++
Sbjct: 154 KEIPVLIVWTLGGKNVSVEGSWDNWKSRKPMQKSGKDHSLLLILPSGVYRYRF 206
>10_08_1042 -
22515298-22515354,22515614-22515709,22515806-22515988,
22516277-22516365,22516481-22516722,22517008-22518116
Length = 591
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Frame = +2
Query: 419 DWETIP--MVK-SHGDFVTIIDLPEGEHQYKYFLME 517
+W+ P +VK +H DF T + EGEHQ FL++
Sbjct: 92 EWKDFPKQIVKLAHSDFRTKKTITEGEHQTHLFLLD 127
>04_04_0705 - 27406405-27406424,27406425-27409260
Length = 951
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -2
Query: 465 VTKSPCDFTMGIVSQSVNVP-EINTCFPPPSHLK 367
++K C +GI+SQ NV ++ +PPP L+
Sbjct: 715 ISKMTCLLRLGIISQDANVKLDLEPFYPPPIKLQ 748
>12_02_0869 -
23844378-23844689,23844924-23845233,23845322-23845447,
23845522-23845727,23845832-23845964,23846045-23846208,
23846856-23846948,23847074-23847196,23847318-23847384,
23847473-23847564,23847667-23847779,23847796-23847845,
23848098-23848189
Length = 626
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -2
Query: 99 WVGYFRHSPFNFQMVICM*VCLINYYVKLCLVP 1
WVG F SP +F IC + YY LC P
Sbjct: 106 WVGVF--SPADFSSAICEAYGVPQYYPMLCTAP 136
>07_03_1042 +
23487326-23487443,23487555-23487957,23488057-23488397,
23488621-23489660
Length = 633
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +3
Query: 90 NQPKEWHKDANKSPDHDQGPSSPAKEGEAFTFD 188
N ++WH +N+ + + GP P G T+D
Sbjct: 526 NSVQQWHHRSNQQMEMEPGPMLPGGLGLGLTYD 558
>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
Length = 5436
Score = 27.9 bits (59), Expect = 7.9
Identities = 24/71 (33%), Positives = 31/71 (43%)
Frame = +2
Query: 254 YTKAVPESDIEYTEQRERSNTLTDGSKIVDDIKVLPTVFKWEGGGKQVFISGTFTDWETI 433
YTK P I Y ++ L S DDI +L T+ G V TFT +I
Sbjct: 4991 YTKKCPPDIILYVDR------LDSWSNHFDDIPLLKTITTILGTSIWVNTVVTFTHANSI 5044
Query: 434 PMVKSHGDFVT 466
P S+GD +T
Sbjct: 5045 PPDNSNGDPMT 5055
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,472,480
Number of Sequences: 37544
Number of extensions: 396210
Number of successful extensions: 951
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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